Gene : Phvul.005G136900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31384:SF20 - AUXIN RESPONSE FACTOR 4 Genomic Order:  1388
Name:  ? Phvul.005G136900 Secondary Identifier:  ? PAC:37152267
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G136900 0.5kb upstream 0.5kb upstream 6347 true Chr05: 37880659-37887005 Phaseolus vulgaris
Phvul.005G136900 0.5kb upstream 0.5kb upstream 500 false Chr05: 37880659-37881158 Phaseolus vulgaris
Phvul.005G136900 0.5kb downstream 0.5kb downstream 6347 true Chr05: 37881159-37887505 Phaseolus vulgaris
Phvul.005G136900 0.5kb downstream 0.5kb downstream 500 false Chr05: 37887006-37887505 Phaseolus vulgaris
Phvul.005G136900 1.0kb upstream 1.0kb upstream 6847 true Chr05: 37880159-37887005 Phaseolus vulgaris
Phvul.005G136900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37880159-37881158 Phaseolus vulgaris
Phvul.005G136900 1.0kb downstream 1.0kb downstream 6847 true Chr05: 37881159-37888005 Phaseolus vulgaris
Phvul.005G136900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37887006-37888005 Phaseolus vulgaris
Phvul.005G136900 2.0kb upstream 2.0kb upstream 7847 true Chr05: 37879159-37887005 Phaseolus vulgaris
Phvul.005G136900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37879159-37881158 Phaseolus vulgaris
Phvul.005G136900 2.0kb downstream 2.0kb downstream 7847 true Chr05: 37881159-37889005 Phaseolus vulgaris
Phvul.005G136900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37887006-37889005 Phaseolus vulgaris
Phvul.005G136900 5.0kb upstream 5.0kb upstream 10847 true Chr05: 37876159-37887005 Phaseolus vulgaris
Phvul.005G136900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37876159-37881158 Phaseolus vulgaris
Phvul.005G136900 5.0kb downstream 5.0kb downstream 10847 true Chr05: 37881159-37892005 Phaseolus vulgaris
Phvul.005G136900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37887006-37892005 Phaseolus vulgaris
Phvul.005G136900 10.0kb upstream 10.0kb upstream 15847 true Chr05: 37871159-37887005 Phaseolus vulgaris
Phvul.005G136900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37871159-37881158 Phaseolus vulgaris
Phvul.005G136900 10.0kb downstream 10.0kb downstream 15847 true Chr05: 37881159-37897005 Phaseolus vulgaris
Phvul.005G136900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37887006-37897005 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310336 5265 Fabidae View MSA
124066923 5270 Rosid View MSA
123747350 5271 Pentapetalae View MSA
122795169 5272 Eudicot View MSA
122043529 5273 Angiosperm View MSA
121310144 5274 Embryophyte View MSA
123347713 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.26395 0.0 8.331   Low
cufflinks 9.51007 0.0 31.1591    
cufflinks 5.05709 0.0 16.2822    
cufflinks 2.26552 0.0 8.60492   Low
cufflinks 18.3614 0.0 59.6707   High
cufflinks 6.60368 0.0 22.6464    
cufflinks 7.72537 0.0 22.997    
cufflinks 1.77258 0.0 7.00747   Low
cufflinks 6.29193 0.0 21.6443    
cufflinks 7.5643 0.0 25.2775    
cufflinks 21.6846 0.0 69.6415   High

0 Strain