Gene : Phvul.L001937 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11404:SF17 - SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC Genomic Order:  4
Name:  ? Phvul.L001937 Secondary Identifier:  ? PAC:37157515
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris DETOX1-PWY Phaseolus vulgaris pathologic  
Pvulgaris DETOX1-PWY-1 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001937 0.5kb upstream 0.5kb upstream 12337 true scaffold_13: 197127-209463 Phaseolus vulgaris
Phvul.L001937 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 208964-209463 Phaseolus vulgaris
Phvul.L001937 0.5kb downstream 0.5kb downstream 12337 true scaffold_13: 196627-208963 Phaseolus vulgaris
Phvul.L001937 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 196627-197126 Phaseolus vulgaris
Phvul.L001937 1.0kb upstream 1.0kb upstream 12837 true scaffold_13: 197127-209963 Phaseolus vulgaris
Phvul.L001937 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 208964-209963 Phaseolus vulgaris
Phvul.L001937 1.0kb downstream 1.0kb downstream 12837 true scaffold_13: 196127-208963 Phaseolus vulgaris
Phvul.L001937 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 196127-197126 Phaseolus vulgaris
Phvul.L001937 2.0kb upstream 2.0kb upstream 13837 true scaffold_13: 197127-210963 Phaseolus vulgaris
Phvul.L001937 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 208964-210963 Phaseolus vulgaris
Phvul.L001937 2.0kb downstream 2.0kb downstream 13837 true scaffold_13: 195127-208963 Phaseolus vulgaris
Phvul.L001937 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 195127-197126 Phaseolus vulgaris
Phvul.L001937 5.0kb upstream 5.0kb upstream 16837 true scaffold_13: 197127-213963 Phaseolus vulgaris
Phvul.L001937 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 208964-213963 Phaseolus vulgaris
Phvul.L001937 5.0kb downstream 5.0kb downstream 16837 true scaffold_13: 192127-208963 Phaseolus vulgaris
Phvul.L001937 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 192127-197126 Phaseolus vulgaris
Phvul.L001937 10.0kb upstream 10.0kb upstream 21837 true scaffold_13: 197127-218963 Phaseolus vulgaris
Phvul.L001937 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 208964-218963 Phaseolus vulgaris
Phvul.L001937 10.0kb downstream 10.0kb downstream 21837 true scaffold_13: 187127-208963 Phaseolus vulgaris
Phvul.L001937 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 187127-197126 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307249 5265 Fabidae View MSA
124067465 5270 Rosid View MSA
123740223 5271 Pentapetalae View MSA
122788752 5272 Eudicot View MSA
122044976 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.48998 0.0 21.41    
cufflinks 10.1589 0.0 28.3095   High
cufflinks 5.57438 0.0 16.4447    
cufflinks 6.87015 0.0 20.0359    
cufflinks 4.78128 0.0 14.4962    
cufflinks 9.14235 0.0 25.7043   High
cufflinks 1.84463 0.0 6.19695   Low
cufflinks 1.68178 0.0 5.66993   Low
cufflinks 2.04097 0.0 6.79733   Low
cufflinks 3.35415 0.0 10.5585    
cufflinks 2.63995 0.0 8.5634    

0 Strain