Gene : Phvul.L003537 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21499:SF33 - HOMOSERINE DEHYDROGENASE Genomic Order:  20
Name:  ? Phvul.L003537 Secondary Identifier:  ? PAC:37157545
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris HOMOSERSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3001 Phaseolus vulgaris pathologic  
Pvulgaris PWY-724 Phaseolus vulgaris pathologic  
Pvulgaris THRESYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L003537 0.5kb upstream 0.5kb upstream 9452 true scaffold_13: 678506-687957 Phaseolus vulgaris
Phvul.L003537 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 678506-679005 Phaseolus vulgaris
Phvul.L003537 0.5kb downstream 0.5kb downstream 9452 true scaffold_13: 679006-688457 Phaseolus vulgaris
Phvul.L003537 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 687958-688457 Phaseolus vulgaris
Phvul.L003537 1.0kb upstream 1.0kb upstream 9952 true scaffold_13: 678006-687957 Phaseolus vulgaris
Phvul.L003537 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 678006-679005 Phaseolus vulgaris
Phvul.L003537 1.0kb downstream 1.0kb downstream 9952 true scaffold_13: 679006-688957 Phaseolus vulgaris
Phvul.L003537 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 687958-688957 Phaseolus vulgaris
Phvul.L003537 2.0kb upstream 2.0kb upstream 10952 true scaffold_13: 677006-687957 Phaseolus vulgaris
Phvul.L003537 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 677006-679005 Phaseolus vulgaris
Phvul.L003537 2.0kb downstream 2.0kb downstream 10952 true scaffold_13: 679006-689957 Phaseolus vulgaris
Phvul.L003537 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 687958-689957 Phaseolus vulgaris
Phvul.L003537 5.0kb upstream 5.0kb upstream 13952 true scaffold_13: 674006-687957 Phaseolus vulgaris
Phvul.L003537 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 674006-679005 Phaseolus vulgaris
Phvul.L003537 5.0kb downstream 5.0kb downstream 13952 true scaffold_13: 679006-692957 Phaseolus vulgaris
Phvul.L003537 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 687958-692957 Phaseolus vulgaris
Phvul.L003537 10.0kb upstream 10.0kb upstream 18952 true scaffold_13: 669006-687957 Phaseolus vulgaris
Phvul.L003537 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 669006-679005 Phaseolus vulgaris
Phvul.L003537 10.0kb downstream 10.0kb downstream 18952 true scaffold_13: 679006-697957 Phaseolus vulgaris
Phvul.L003537 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 687958-697957 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305491 5265 Fabidae View MSA
124062775 5270 Rosid View MSA
123740432 5271 Pentapetalae View MSA
122769980 5272 Eudicot View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.58255 0.0 18.6599    
cufflinks 7.13716 0.0 20.1405    
cufflinks 8.63363 0.0 23.9088   High
cufflinks 6.35508 0.0 18.3066    
cufflinks 4.86209 0.0 14.3587   Low
cufflinks 5.52002 0.0 15.9881    
cufflinks 5.99915 0.0 17.2302    
cufflinks 8.29051 0.0 22.998   High
cufflinks 6.1277 0.0 17.6237    
cufflinks 6.31566 0.0 18.0272    
cufflinks 5.07227 0.0 14.8812   Low

0 Strain