Gene : Phvul.L004437 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23308//PTHR23308:SF29 - NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 // SUBFAMILY NOT NAMED Genomic Order:  29
Name:  ? Phvul.L004437 Secondary Identifier:  ? PAC:37157548
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L004437 0.5kb upstream 0.5kb upstream 21797 true scaffold_13: 997642-1019438 Phaseolus vulgaris
Phvul.L004437 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 1018939-1019438 Phaseolus vulgaris
Phvul.L004437 0.5kb downstream 0.5kb downstream 21797 true scaffold_13: 997142-1018938 Phaseolus vulgaris
Phvul.L004437 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 997142-997641 Phaseolus vulgaris
Phvul.L004437 1.0kb upstream 1.0kb upstream 22297 true scaffold_13: 997642-1019938 Phaseolus vulgaris
Phvul.L004437 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 1018939-1019938 Phaseolus vulgaris
Phvul.L004437 1.0kb downstream 1.0kb downstream 22297 true scaffold_13: 996642-1018938 Phaseolus vulgaris
Phvul.L004437 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 996642-997641 Phaseolus vulgaris
Phvul.L004437 2.0kb upstream 2.0kb upstream 23297 true scaffold_13: 997642-1020938 Phaseolus vulgaris
Phvul.L004437 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 1018939-1020938 Phaseolus vulgaris
Phvul.L004437 2.0kb downstream 2.0kb downstream 23297 true scaffold_13: 995642-1018938 Phaseolus vulgaris
Phvul.L004437 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 995642-997641 Phaseolus vulgaris
Phvul.L004437 5.0kb upstream 5.0kb upstream 26297 true scaffold_13: 997642-1023938 Phaseolus vulgaris
Phvul.L004437 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 1018939-1023938 Phaseolus vulgaris
Phvul.L004437 5.0kb downstream 5.0kb downstream 26297 true scaffold_13: 992642-1018938 Phaseolus vulgaris
Phvul.L004437 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 992642-997641 Phaseolus vulgaris
Phvul.L004437 10.0kb upstream 10.0kb upstream 31297 true scaffold_13: 997642-1028938 Phaseolus vulgaris
Phvul.L004437 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 1018939-1028938 Phaseolus vulgaris
Phvul.L004437 10.0kb downstream 10.0kb downstream 31297 true scaffold_13: 987642-1018938 Phaseolus vulgaris
Phvul.L004437 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 987642-997641 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310236 5265 Fabidae View MSA
124060596 5270 Rosid View MSA
123741066 5271 Pentapetalae View MSA
122770002 5272 Eudicot View MSA
122042553 5273 Angiosperm View MSA
121344574 5274 Embryophyte View MSA
123426095 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.3462 0.0 69.0362    
cufflinks 21.253 0.0 75.0334    
cufflinks 137.424 0.0 458.817 High High
cufflinks 17.4394 0.0 56.0804    
cufflinks 14.5163 0.0 55.7832    
cufflinks 34.2175 0.0 110.306 High  
cufflinks 0.481012 0.0 3.55898 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.429662 0.0 1.71742 Low Low
cufflinks 19.3277 0.0 70.2187    
cufflinks 11.9551 0.0 47.9899    

0 Strain