Gene : Phvul.010G022000 P. vulgaris v2.1
Defline:  (1 of 4) PTHR31413:SF4 - NINJA-FAMILY PROTEIN AFP1-RELATED Genomic Order:  212
Name:  ? Phvul.010G022000 Secondary Identifier:  ? PAC:37143065
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G022000 0.5kb upstream 0.5kb upstream 2544 true Chr10: 3117543-3120086 Phaseolus vulgaris
Phvul.010G022000 0.5kb upstream 0.5kb upstream 500 false Chr10: 3119587-3120086 Phaseolus vulgaris
Phvul.010G022000 0.5kb downstream 0.5kb downstream 2544 true Chr10: 3117043-3119586 Phaseolus vulgaris
Phvul.010G022000 0.5kb downstream 0.5kb downstream 500 false Chr10: 3117043-3117542 Phaseolus vulgaris
Phvul.010G022000 1.0kb upstream 1.0kb upstream 3044 true Chr10: 3117543-3120586 Phaseolus vulgaris
Phvul.010G022000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3119587-3120586 Phaseolus vulgaris
Phvul.010G022000 1.0kb downstream 1.0kb downstream 3044 true Chr10: 3116543-3119586 Phaseolus vulgaris
Phvul.010G022000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3116543-3117542 Phaseolus vulgaris
Phvul.010G022000 2.0kb upstream 2.0kb upstream 4044 true Chr10: 3117543-3121586 Phaseolus vulgaris
Phvul.010G022000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3119587-3121586 Phaseolus vulgaris
Phvul.010G022000 2.0kb downstream 2.0kb downstream 4044 true Chr10: 3115543-3119586 Phaseolus vulgaris
Phvul.010G022000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3115543-3117542 Phaseolus vulgaris
Phvul.010G022000 5.0kb upstream 5.0kb upstream 7044 true Chr10: 3117543-3124586 Phaseolus vulgaris
Phvul.010G022000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3119587-3124586 Phaseolus vulgaris
Phvul.010G022000 5.0kb downstream 5.0kb downstream 7044 true Chr10: 3112543-3119586 Phaseolus vulgaris
Phvul.010G022000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3112543-3117542 Phaseolus vulgaris
Phvul.010G022000 10.0kb upstream 10.0kb upstream 12044 true Chr10: 3117543-3129586 Phaseolus vulgaris
Phvul.010G022000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3119587-3129586 Phaseolus vulgaris
Phvul.010G022000 10.0kb downstream 10.0kb downstream 12044 true Chr10: 3107543-3119586 Phaseolus vulgaris
Phvul.010G022000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3107543-3117542 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301661 5265 Fabidae View MSA
124071046 5270 Rosid View MSA
123753389 5271 Pentapetalae View MSA
122792096 5272 Eudicot View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.21906 0.0 4.13   High
cufflinks 0.193019 0.0 0.772669 Low  
cufflinks 0.0364567 0.0 0.170278 Low Low
cufflinks 1.58206 0.0 5.17884   High
cufflinks 0.409123 0.0 1.54383 Low  
cufflinks 0.238006 0.0 0.936936 Low  
cufflinks 0.253478 0.0 0.986752 Low  
cufflinks 0.469006 0.0 1.74701    
cufflinks 0.0895897 0.0 0.378832 Low  
cufflinks 0.043561 0.0 0.199764 Low Low
cufflinks 0.732441 0.0 2.61892    

0 Strain