Gene : Phvul.005G122400 P. vulgaris v2.1
Defline:  (1 of 1) K14593 - capsanthin/capsorubin synthase (CCS1) Genomic Order:  1229
Name:  ? Phvul.005G122400 Secondary Identifier:  ? PAC:37154088
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6809 Phaseolus vulgaris pathologic  
Pvulgaris PWY-695 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G122400 0.5kb upstream 0.5kb upstream 2300 true Chr05: 35953810-35956109 Phaseolus vulgaris
Phvul.005G122400 0.5kb upstream 0.5kb upstream 500 false Chr05: 35955610-35956109 Phaseolus vulgaris
Phvul.005G122400 0.5kb downstream 0.5kb downstream 2300 true Chr05: 35953310-35955609 Phaseolus vulgaris
Phvul.005G122400 0.5kb downstream 0.5kb downstream 500 false Chr05: 35953310-35953809 Phaseolus vulgaris
Phvul.005G122400 1.0kb upstream 1.0kb upstream 2800 true Chr05: 35953810-35956609 Phaseolus vulgaris
Phvul.005G122400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35955610-35956609 Phaseolus vulgaris
Phvul.005G122400 1.0kb downstream 1.0kb downstream 2800 true Chr05: 35952810-35955609 Phaseolus vulgaris
Phvul.005G122400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35952810-35953809 Phaseolus vulgaris
Phvul.005G122400 2.0kb upstream 2.0kb upstream 3800 true Chr05: 35953810-35957609 Phaseolus vulgaris
Phvul.005G122400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35955610-35957609 Phaseolus vulgaris
Phvul.005G122400 2.0kb downstream 2.0kb downstream 3800 true Chr05: 35951810-35955609 Phaseolus vulgaris
Phvul.005G122400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35951810-35953809 Phaseolus vulgaris
Phvul.005G122400 5.0kb upstream 5.0kb upstream 6800 true Chr05: 35953810-35960609 Phaseolus vulgaris
Phvul.005G122400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35955610-35960609 Phaseolus vulgaris
Phvul.005G122400 5.0kb downstream 5.0kb downstream 6800 true Chr05: 35948810-35955609 Phaseolus vulgaris
Phvul.005G122400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35948810-35953809 Phaseolus vulgaris
Phvul.005G122400 10.0kb upstream 10.0kb upstream 11800 true Chr05: 35953810-35965609 Phaseolus vulgaris
Phvul.005G122400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35955610-35965609 Phaseolus vulgaris
Phvul.005G122400 10.0kb downstream 10.0kb downstream 11800 true Chr05: 35943810-35955609 Phaseolus vulgaris
Phvul.005G122400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35943810-35953809 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308924 5265 Fabidae View MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.6612 0.0 40.8497    
cufflinks 1.96667 0.0 6.23659    
cufflinks 0.120858 0.0 0.49533 Low Low
cufflinks 96.1127 0.0 266.546 High High
cufflinks 1.34029 0.0 4.46327    
cufflinks 0.227648 0.0 0.888865 Low Low
cufflinks 2.98732 0.0 9.02268    
cufflinks 3.44056 0.0 10.1958    
cufflinks 6.79221 0.0 18.9225    
cufflinks 7.58562 0.0 20.8877    
cufflinks 1.70586 0.0 5.51962    

0 Strain