Gene : Phvul.005G123200 P. vulgaris v2.1
Defline:  (1 of 11) PF11250 - Fantastic Four meristem regulator (FAF) Genomic Order:  1236
Name:  ? Phvul.005G123200 Secondary Identifier:  ? PAC:37154192
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G123200 0.5kb upstream 0.5kb upstream 1572 true Chr05: 36039621-36041192 Phaseolus vulgaris
Phvul.005G123200 0.5kb upstream 0.5kb upstream 500 false Chr05: 36040693-36041192 Phaseolus vulgaris
Phvul.005G123200 0.5kb downstream 0.5kb downstream 1572 true Chr05: 36039121-36040692 Phaseolus vulgaris
Phvul.005G123200 0.5kb downstream 0.5kb downstream 500 false Chr05: 36039121-36039620 Phaseolus vulgaris
Phvul.005G123200 1.0kb upstream 1.0kb upstream 2072 true Chr05: 36039621-36041692 Phaseolus vulgaris
Phvul.005G123200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36040693-36041692 Phaseolus vulgaris
Phvul.005G123200 1.0kb downstream 1.0kb downstream 2072 true Chr05: 36038621-36040692 Phaseolus vulgaris
Phvul.005G123200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36038621-36039620 Phaseolus vulgaris
Phvul.005G123200 2.0kb upstream 2.0kb upstream 3072 true Chr05: 36039621-36042692 Phaseolus vulgaris
Phvul.005G123200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36040693-36042692 Phaseolus vulgaris
Phvul.005G123200 2.0kb downstream 2.0kb downstream 3072 true Chr05: 36037621-36040692 Phaseolus vulgaris
Phvul.005G123200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36037621-36039620 Phaseolus vulgaris
Phvul.005G123200 5.0kb upstream 5.0kb upstream 6072 true Chr05: 36039621-36045692 Phaseolus vulgaris
Phvul.005G123200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36040693-36045692 Phaseolus vulgaris
Phvul.005G123200 5.0kb downstream 5.0kb downstream 6072 true Chr05: 36034621-36040692 Phaseolus vulgaris
Phvul.005G123200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36034621-36039620 Phaseolus vulgaris
Phvul.005G123200 10.0kb upstream 10.0kb upstream 11072 true Chr05: 36039621-36050692 Phaseolus vulgaris
Phvul.005G123200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36040693-36050692 Phaseolus vulgaris
Phvul.005G123200 10.0kb downstream 10.0kb downstream 11072 true Chr05: 36029621-36040692 Phaseolus vulgaris
Phvul.005G123200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36029621-36039620 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309919 5265 Fabidae View MSA
124069598 5270 Rosid View MSA
123752468 5271 Pentapetalae View MSA
122797002 5272 Eudicot View MSA
122048900 5273 Angiosperm View MSA
121311160 5274 Embryophyte View MSA
123348494 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.79722 0.0 6.2249    
cufflinks 0.243017 0.0 1.00099 Low  
cufflinks 11.0194 0.0 31.0337   High
cufflinks 0.49343 0.0 1.92716 Low  
cufflinks 0.322241 0.0 1.30254 Low  
cufflinks 4.17636 0.0 13.1591    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0440822 0.0 0.214114 Low Low
cufflinks 3.2555 0.0 10.625    
cufflinks 0.266295 0.0 1.09146 Low  

0 Strain