Gene : Phvul.005G128000 P. vulgaris v2.1
Defline:  (1 of 2) K15505 - DNA repair protein RAD5 [EC:3.6.4.-] (RAD5) Genomic Order:  1287
Name:  ? Phvul.005G128000 Secondary Identifier:  ? PAC:37152532
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G128000 0.5kb upstream 0.5kb upstream 9643 true Chr05: 36569152-36578794 Phaseolus vulgaris
Phvul.005G128000 0.5kb upstream 0.5kb upstream 500 false Chr05: 36578295-36578794 Phaseolus vulgaris
Phvul.005G128000 0.5kb downstream 0.5kb downstream 9643 true Chr05: 36568652-36578294 Phaseolus vulgaris
Phvul.005G128000 0.5kb downstream 0.5kb downstream 500 false Chr05: 36568652-36569151 Phaseolus vulgaris
Phvul.005G128000 1.0kb upstream 1.0kb upstream 10143 true Chr05: 36569152-36579294 Phaseolus vulgaris
Phvul.005G128000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36578295-36579294 Phaseolus vulgaris
Phvul.005G128000 1.0kb downstream 1.0kb downstream 10143 true Chr05: 36568152-36578294 Phaseolus vulgaris
Phvul.005G128000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36568152-36569151 Phaseolus vulgaris
Phvul.005G128000 2.0kb upstream 2.0kb upstream 11143 true Chr05: 36569152-36580294 Phaseolus vulgaris
Phvul.005G128000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36578295-36580294 Phaseolus vulgaris
Phvul.005G128000 2.0kb downstream 2.0kb downstream 11143 true Chr05: 36567152-36578294 Phaseolus vulgaris
Phvul.005G128000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36567152-36569151 Phaseolus vulgaris
Phvul.005G128000 5.0kb upstream 5.0kb upstream 14143 true Chr05: 36569152-36583294 Phaseolus vulgaris
Phvul.005G128000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36578295-36583294 Phaseolus vulgaris
Phvul.005G128000 5.0kb downstream 5.0kb downstream 14143 true Chr05: 36564152-36578294 Phaseolus vulgaris
Phvul.005G128000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36564152-36569151 Phaseolus vulgaris
Phvul.005G128000 10.0kb upstream 10.0kb upstream 19143 true Chr05: 36569152-36588294 Phaseolus vulgaris
Phvul.005G128000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36578295-36588294 Phaseolus vulgaris
Phvul.005G128000 10.0kb downstream 10.0kb downstream 19143 true Chr05: 36559152-36578294 Phaseolus vulgaris
Phvul.005G128000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36559152-36569151 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305577 5265 Fabidae View MSA
124063428 5270 Rosid View MSA
123739188 5271 Pentapetalae View MSA
122788458 5272 Eudicot View MSA
122044838 5273 Angiosperm View MSA
121345096 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.32441 0.0 5.51244   Low
cufflinks 2.83427 0.0 9.28232    
cufflinks 3.27355 0.0 12.1955    
cufflinks 1.23548 0.0 3.99591   Low
cufflinks 3.66682 0.0 13.4857    
cufflinks 3.12345 0.0 11.7498    
cufflinks 3.8881 0.0 12.0217    
cufflinks 3.4293 0.0 10.7541    
cufflinks 3.39842 0.0 12.7251    
cufflinks 3.82557 0.0 14.196    
cufflinks 2.98035 0.0 11.5494    

0 Strain