Gene : Phvul.007G268400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31852:SF28 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  2543
Name:  ? Phvul.007G268400 Secondary Identifier:  ? PAC:37167370
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G268400 0.5kb upstream 0.5kb upstream 1659 true Chr07: 38960063-38961721 Phaseolus vulgaris
Phvul.007G268400 0.5kb upstream 0.5kb upstream 500 false Chr07: 38960063-38960562 Phaseolus vulgaris
Phvul.007G268400 0.5kb downstream 0.5kb downstream 1659 true Chr07: 38960563-38962221 Phaseolus vulgaris
Phvul.007G268400 0.5kb downstream 0.5kb downstream 500 false Chr07: 38961722-38962221 Phaseolus vulgaris
Phvul.007G268400 1.0kb upstream 1.0kb upstream 2159 true Chr07: 38959563-38961721 Phaseolus vulgaris
Phvul.007G268400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 38959563-38960562 Phaseolus vulgaris
Phvul.007G268400 1.0kb downstream 1.0kb downstream 2159 true Chr07: 38960563-38962721 Phaseolus vulgaris
Phvul.007G268400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 38961722-38962721 Phaseolus vulgaris
Phvul.007G268400 2.0kb upstream 2.0kb upstream 3159 true Chr07: 38958563-38961721 Phaseolus vulgaris
Phvul.007G268400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 38958563-38960562 Phaseolus vulgaris
Phvul.007G268400 2.0kb downstream 2.0kb downstream 3159 true Chr07: 38960563-38963721 Phaseolus vulgaris
Phvul.007G268400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 38961722-38963721 Phaseolus vulgaris
Phvul.007G268400 5.0kb upstream 5.0kb upstream 6159 true Chr07: 38955563-38961721 Phaseolus vulgaris
Phvul.007G268400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 38955563-38960562 Phaseolus vulgaris
Phvul.007G268400 5.0kb downstream 5.0kb downstream 6159 true Chr07: 38960563-38966721 Phaseolus vulgaris
Phvul.007G268400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 38961722-38966721 Phaseolus vulgaris
Phvul.007G268400 10.0kb upstream 10.0kb upstream 11159 true Chr07: 38950563-38961721 Phaseolus vulgaris
Phvul.007G268400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 38950563-38960562 Phaseolus vulgaris
Phvul.007G268400 10.0kb downstream 10.0kb downstream 11159 true Chr07: 38960563-38971721 Phaseolus vulgaris
Phvul.007G268400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 38961722-38971721 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311671 5265 Fabidae View MSA
124050487 5270 Rosid View MSA
123741970 5271 Pentapetalae View MSA
122797566 5272 Eudicot View MSA
122045519 5273 Angiosperm View MSA
121310460 5274 Embryophyte View MSA
123347936 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.75857 0.0 20.1096    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 5.3515 0.0 16.1897    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0190273 0.0 0.101775 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain