Gene : Phvul.005G127600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Genomic Order:  1283
Name:  ? Phvul.005G127600 Secondary Identifier:  ? PAC:37153380
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G127600 0.5kb upstream 0.5kb upstream 3923 true Chr05: 36529247-36533169 Phaseolus vulgaris
Phvul.005G127600 0.5kb upstream 0.5kb upstream 500 false Chr05: 36529247-36529746 Phaseolus vulgaris
Phvul.005G127600 0.5kb downstream 0.5kb downstream 3923 true Chr05: 36529747-36533669 Phaseolus vulgaris
Phvul.005G127600 0.5kb downstream 0.5kb downstream 500 false Chr05: 36533170-36533669 Phaseolus vulgaris
Phvul.005G127600 1.0kb upstream 1.0kb upstream 4423 true Chr05: 36528747-36533169 Phaseolus vulgaris
Phvul.005G127600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36528747-36529746 Phaseolus vulgaris
Phvul.005G127600 1.0kb downstream 1.0kb downstream 4423 true Chr05: 36529747-36534169 Phaseolus vulgaris
Phvul.005G127600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36533170-36534169 Phaseolus vulgaris
Phvul.005G127600 2.0kb upstream 2.0kb upstream 5423 true Chr05: 36527747-36533169 Phaseolus vulgaris
Phvul.005G127600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36527747-36529746 Phaseolus vulgaris
Phvul.005G127600 2.0kb downstream 2.0kb downstream 5423 true Chr05: 36529747-36535169 Phaseolus vulgaris
Phvul.005G127600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36533170-36535169 Phaseolus vulgaris
Phvul.005G127600 5.0kb upstream 5.0kb upstream 8423 true Chr05: 36524747-36533169 Phaseolus vulgaris
Phvul.005G127600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36524747-36529746 Phaseolus vulgaris
Phvul.005G127600 5.0kb downstream 5.0kb downstream 8423 true Chr05: 36529747-36538169 Phaseolus vulgaris
Phvul.005G127600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36533170-36538169 Phaseolus vulgaris
Phvul.005G127600 10.0kb upstream 10.0kb upstream 13423 true Chr05: 36519747-36533169 Phaseolus vulgaris
Phvul.005G127600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36519747-36529746 Phaseolus vulgaris
Phvul.005G127600 10.0kb downstream 10.0kb downstream 13423 true Chr05: 36529747-36543169 Phaseolus vulgaris
Phvul.005G127600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36533170-36543169 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313327 5265 Fabidae View MSA
124068201 5270 Rosid View MSA
123749750 5271 Pentapetalae View MSA
122797243 5272 Eudicot View MSA
122051478 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121349885 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.2751 0.0 151.072 High  
cufflinks 73.7259 0.0 197.653 High High
cufflinks 22.5751 0.0 58.5137   Low
cufflinks 37.8214 0.0 97.8203 High  
cufflinks 47.2734 0.0 122.849 High  
cufflinks 16.7473 0.0 43.9482   Low
cufflinks 41.8117 0.0 108.677 High  
cufflinks 43.7852 0.0 114.115 High  
cufflinks 68.1879 0.0 181.802 High High
cufflinks 23.4265 0.0 60.7892   Low
cufflinks 44.1098 0.0 114.534 High  

0 Strain