Gene : Phvul.005G115100 P. vulgaris v2.1
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  1151
Name:  ? Phvul.005G115100 Secondary Identifier:  ? PAC:37152648
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYOXYLATE-BYPASS Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G115100 0.5kb upstream 0.5kb upstream 9495 true Chr05: 34598667-34608161 Phaseolus vulgaris
Phvul.005G115100 0.5kb upstream 0.5kb upstream 500 false Chr05: 34607662-34608161 Phaseolus vulgaris
Phvul.005G115100 0.5kb downstream 0.5kb downstream 9495 true Chr05: 34598167-34607661 Phaseolus vulgaris
Phvul.005G115100 0.5kb downstream 0.5kb downstream 500 false Chr05: 34598167-34598666 Phaseolus vulgaris
Phvul.005G115100 1.0kb upstream 1.0kb upstream 9995 true Chr05: 34598667-34608661 Phaseolus vulgaris
Phvul.005G115100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 34607662-34608661 Phaseolus vulgaris
Phvul.005G115100 1.0kb downstream 1.0kb downstream 9995 true Chr05: 34597667-34607661 Phaseolus vulgaris
Phvul.005G115100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 34597667-34598666 Phaseolus vulgaris
Phvul.005G115100 2.0kb upstream 2.0kb upstream 10995 true Chr05: 34598667-34609661 Phaseolus vulgaris
Phvul.005G115100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 34607662-34609661 Phaseolus vulgaris
Phvul.005G115100 2.0kb downstream 2.0kb downstream 10995 true Chr05: 34596667-34607661 Phaseolus vulgaris
Phvul.005G115100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 34596667-34598666 Phaseolus vulgaris
Phvul.005G115100 5.0kb upstream 5.0kb upstream 13995 true Chr05: 34598667-34612661 Phaseolus vulgaris
Phvul.005G115100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 34607662-34612661 Phaseolus vulgaris
Phvul.005G115100 5.0kb downstream 5.0kb downstream 13995 true Chr05: 34593667-34607661 Phaseolus vulgaris
Phvul.005G115100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 34593667-34598666 Phaseolus vulgaris
Phvul.005G115100 10.0kb upstream 10.0kb upstream 18995 true Chr05: 34598667-34617661 Phaseolus vulgaris
Phvul.005G115100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 34607662-34617661 Phaseolus vulgaris
Phvul.005G115100 10.0kb downstream 10.0kb downstream 18995 true Chr05: 34588667-34607661 Phaseolus vulgaris
Phvul.005G115100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 34588667-34598666 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303297 5265 Fabidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 63.1819 0.0 184.425 High Low
cufflinks 79.9189 0.0 241.355 High  
cufflinks 74.9183 0.0 224.357 High  
cufflinks 111.104 0.0 351.431 High High
cufflinks 82.4198 0.0 249.202 High  
cufflinks 63.503 0.0 185.585 High Low
cufflinks 78.658 0.0 237.959 High  
cufflinks 78.119 0.0 236.246 High  
cufflinks 127.853 0.0 418.756 High High
cufflinks 70.3494 0.0 208.319 High  
cufflinks 77.8393 0.0 233.49 High  

0 Strain