Gene : Phvul.005G117833 P. vulgaris v2.1
Defline:  (1 of 10) PTHR13301:SF53 - CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED Genomic Order:  1182
Name:  ? Phvul.005G117833 Secondary Identifier:  ? PAC:37154125
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G117833 0.5kb upstream 0.5kb upstream 5461 true Chr05: 35237815-35243275 Phaseolus vulgaris
Phvul.005G117833 0.5kb upstream 0.5kb upstream 500 false Chr05: 35237815-35238314 Phaseolus vulgaris
Phvul.005G117833 0.5kb downstream 0.5kb downstream 5461 true Chr05: 35238315-35243775 Phaseolus vulgaris
Phvul.005G117833 0.5kb downstream 0.5kb downstream 500 false Chr05: 35243276-35243775 Phaseolus vulgaris
Phvul.005G117833 1.0kb upstream 1.0kb upstream 5961 true Chr05: 35237315-35243275 Phaseolus vulgaris
Phvul.005G117833 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35237315-35238314 Phaseolus vulgaris
Phvul.005G117833 1.0kb downstream 1.0kb downstream 5961 true Chr05: 35238315-35244275 Phaseolus vulgaris
Phvul.005G117833 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35243276-35244275 Phaseolus vulgaris
Phvul.005G117833 2.0kb upstream 2.0kb upstream 6961 true Chr05: 35236315-35243275 Phaseolus vulgaris
Phvul.005G117833 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35236315-35238314 Phaseolus vulgaris
Phvul.005G117833 2.0kb downstream 2.0kb downstream 6961 true Chr05: 35238315-35245275 Phaseolus vulgaris
Phvul.005G117833 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35243276-35245275 Phaseolus vulgaris
Phvul.005G117833 5.0kb upstream 5.0kb upstream 9961 true Chr05: 35233315-35243275 Phaseolus vulgaris
Phvul.005G117833 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35233315-35238314 Phaseolus vulgaris
Phvul.005G117833 5.0kb downstream 5.0kb downstream 9961 true Chr05: 35238315-35248275 Phaseolus vulgaris
Phvul.005G117833 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35243276-35248275 Phaseolus vulgaris
Phvul.005G117833 10.0kb upstream 10.0kb upstream 14961 true Chr05: 35228315-35243275 Phaseolus vulgaris
Phvul.005G117833 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35228315-35238314 Phaseolus vulgaris
Phvul.005G117833 10.0kb downstream 10.0kb downstream 14961 true Chr05: 35238315-35253275 Phaseolus vulgaris
Phvul.005G117833 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35243276-35253275 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253523 5265 Fabidae View MSA
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.715708 0.0 2.60105    
cufflinks 1.39393 0.0 4.74108    
cufflinks 0.252011 0.0 0.996154 Low  
cufflinks 0.593676 0.0 2.21311    
cufflinks 0.220727 0.0 0.889942 Low  
cufflinks 1.99486 0.0 6.51066   High
cufflinks 0.029381 0.0 0.142412 Low Low
cufflinks 0.0241165 0.0 0.118574 Low Low
cufflinks 0.0535657 0.0 0.244253 Low Low
cufflinks 2.23264 0.0 7.21267   High
cufflinks 0.458274 0.0 1.74215 Low  

0 Strain