Gene : Phvul.005G116551 P. vulgaris v2.1
Defline:  (1 of 10) PTHR13301:SF53 - CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED Genomic Order:  1168
Name:  ? Phvul.005G116551 Secondary Identifier:  ? PAC:37153386
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G116551 0.5kb upstream 0.5kb upstream 5722 true Chr05: 35028575-35034296 Phaseolus vulgaris
Phvul.005G116551 0.5kb upstream 0.5kb upstream 500 false Chr05: 35028575-35029074 Phaseolus vulgaris
Phvul.005G116551 0.5kb downstream 0.5kb downstream 5722 true Chr05: 35029075-35034796 Phaseolus vulgaris
Phvul.005G116551 0.5kb downstream 0.5kb downstream 500 false Chr05: 35034297-35034796 Phaseolus vulgaris
Phvul.005G116551 1.0kb upstream 1.0kb upstream 6222 true Chr05: 35028075-35034296 Phaseolus vulgaris
Phvul.005G116551 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35028075-35029074 Phaseolus vulgaris
Phvul.005G116551 1.0kb downstream 1.0kb downstream 6222 true Chr05: 35029075-35035296 Phaseolus vulgaris
Phvul.005G116551 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35034297-35035296 Phaseolus vulgaris
Phvul.005G116551 2.0kb upstream 2.0kb upstream 7222 true Chr05: 35027075-35034296 Phaseolus vulgaris
Phvul.005G116551 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35027075-35029074 Phaseolus vulgaris
Phvul.005G116551 2.0kb downstream 2.0kb downstream 7222 true Chr05: 35029075-35036296 Phaseolus vulgaris
Phvul.005G116551 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35034297-35036296 Phaseolus vulgaris
Phvul.005G116551 5.0kb upstream 5.0kb upstream 10222 true Chr05: 35024075-35034296 Phaseolus vulgaris
Phvul.005G116551 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35024075-35029074 Phaseolus vulgaris
Phvul.005G116551 5.0kb downstream 5.0kb downstream 10222 true Chr05: 35029075-35039296 Phaseolus vulgaris
Phvul.005G116551 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35034297-35039296 Phaseolus vulgaris
Phvul.005G116551 10.0kb upstream 10.0kb upstream 15222 true Chr05: 35019075-35034296 Phaseolus vulgaris
Phvul.005G116551 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35019075-35029074 Phaseolus vulgaris
Phvul.005G116551 10.0kb downstream 10.0kb downstream 15222 true Chr05: 35029075-35044296 Phaseolus vulgaris
Phvul.005G116551 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35034297-35044296 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253523 5265 Fabidae View MSA
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.903078 0.0 3.15585    
cufflinks 0.985283 0.0 3.41272    
cufflinks 0.104397 0.0 0.436727 Low  
cufflinks 0.399682 0.0 1.5178 Low  
cufflinks 0.287245 0.0 1.11929 Low  
cufflinks 1.44218 0.0 4.78181    
cufflinks 0.0278607 0.0 0.133216 Low  
cufflinks 0.113589 0.0 0.470651 Low  
cufflinks 4.55088E-4 0.0 0.00701891 Low Low
cufflinks 17.8942 0.0 46.6542   High
cufflinks 0.153854 0.0 0.628309 Low  

0 Strain