Gene : Phvul.010G116200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24093:SF289 - CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  1163
Name:  ? Phvul.010G116200 Secondary Identifier:  ? PAC:37142563
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G116200 0.5kb upstream 0.5kb upstream 6421 true Chr10: 39381863-39388283 Phaseolus vulgaris
Phvul.010G116200 0.5kb upstream 0.5kb upstream 500 false Chr10: 39381863-39382362 Phaseolus vulgaris
Phvul.010G116200 0.5kb downstream 0.5kb downstream 6421 true Chr10: 39382363-39388783 Phaseolus vulgaris
Phvul.010G116200 0.5kb downstream 0.5kb downstream 500 false Chr10: 39388284-39388783 Phaseolus vulgaris
Phvul.010G116200 1.0kb upstream 1.0kb upstream 6921 true Chr10: 39381363-39388283 Phaseolus vulgaris
Phvul.010G116200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 39381363-39382362 Phaseolus vulgaris
Phvul.010G116200 1.0kb downstream 1.0kb downstream 6921 true Chr10: 39382363-39389283 Phaseolus vulgaris
Phvul.010G116200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 39388284-39389283 Phaseolus vulgaris
Phvul.010G116200 2.0kb upstream 2.0kb upstream 7921 true Chr10: 39380363-39388283 Phaseolus vulgaris
Phvul.010G116200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 39380363-39382362 Phaseolus vulgaris
Phvul.010G116200 2.0kb downstream 2.0kb downstream 7921 true Chr10: 39382363-39390283 Phaseolus vulgaris
Phvul.010G116200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 39388284-39390283 Phaseolus vulgaris
Phvul.010G116200 5.0kb upstream 5.0kb upstream 10921 true Chr10: 39377363-39388283 Phaseolus vulgaris
Phvul.010G116200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 39377363-39382362 Phaseolus vulgaris
Phvul.010G116200 5.0kb downstream 5.0kb downstream 10921 true Chr10: 39382363-39393283 Phaseolus vulgaris
Phvul.010G116200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 39388284-39393283 Phaseolus vulgaris
Phvul.010G116200 10.0kb upstream 10.0kb upstream 15921 true Chr10: 39372363-39388283 Phaseolus vulgaris
Phvul.010G116200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 39372363-39382362 Phaseolus vulgaris
Phvul.010G116200 10.0kb downstream 10.0kb downstream 15921 true Chr10: 39382363-39398283 Phaseolus vulgaris
Phvul.010G116200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 39388284-39398283 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302927 5265 Fabidae View MSA
124070166 5270 Rosid View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.72333 0.0 19.0032    
cufflinks 3.95783 0.0 14.0456    
cufflinks 3.6085 0.0 12.9379    
cufflinks 2.61437 0.0 8.86086   Low
cufflinks 2.59244 0.0 10.197   Low
cufflinks 4.11452 0.0 14.6803    
cufflinks 10.1268 0.0 32.0204   High
cufflinks 5.59608 0.0 18.6274    
cufflinks 10.7986 0.0 34.1351   High
cufflinks 2.31174 0.0 9.2042   Low
cufflinks 4.92895 0.0 16.9227    

0 Strain