Gene : Phvul.006G056900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13468:SF1 - PROTEIN DEK Genomic Order:  527
Name:  ? Phvul.006G056900 Secondary Identifier:  ? PAC:37172131
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G056900 0.5kb upstream 0.5kb upstream 10502 true Chr06: 16384555-16395056 Phaseolus vulgaris
Phvul.006G056900 0.5kb upstream 0.5kb upstream 500 false Chr06: 16384555-16385054 Phaseolus vulgaris
Phvul.006G056900 0.5kb downstream 0.5kb downstream 10502 true Chr06: 16385055-16395556 Phaseolus vulgaris
Phvul.006G056900 0.5kb downstream 0.5kb downstream 500 false Chr06: 16395057-16395556 Phaseolus vulgaris
Phvul.006G056900 1.0kb upstream 1.0kb upstream 11002 true Chr06: 16384055-16395056 Phaseolus vulgaris
Phvul.006G056900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16384055-16385054 Phaseolus vulgaris
Phvul.006G056900 1.0kb downstream 1.0kb downstream 11002 true Chr06: 16385055-16396056 Phaseolus vulgaris
Phvul.006G056900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16395057-16396056 Phaseolus vulgaris
Phvul.006G056900 2.0kb upstream 2.0kb upstream 12002 true Chr06: 16383055-16395056 Phaseolus vulgaris
Phvul.006G056900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16383055-16385054 Phaseolus vulgaris
Phvul.006G056900 2.0kb downstream 2.0kb downstream 12002 true Chr06: 16385055-16397056 Phaseolus vulgaris
Phvul.006G056900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16395057-16397056 Phaseolus vulgaris
Phvul.006G056900 5.0kb upstream 5.0kb upstream 15002 true Chr06: 16380055-16395056 Phaseolus vulgaris
Phvul.006G056900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16380055-16385054 Phaseolus vulgaris
Phvul.006G056900 5.0kb downstream 5.0kb downstream 15002 true Chr06: 16385055-16400056 Phaseolus vulgaris
Phvul.006G056900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16395057-16400056 Phaseolus vulgaris
Phvul.006G056900 10.0kb upstream 10.0kb upstream 20002 true Chr06: 16375055-16395056 Phaseolus vulgaris
Phvul.006G056900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16375055-16385054 Phaseolus vulgaris
Phvul.006G056900 10.0kb downstream 10.0kb downstream 20002 true Chr06: 16385055-16405056 Phaseolus vulgaris
Phvul.006G056900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16395057-16405056 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312420 5265 Fabidae View MSA
124072894 5270 Rosid View MSA
123748946 5271 Pentapetalae View MSA
122791456 5272 Eudicot View MSA
122042773 5273 Angiosperm View MSA
121346519 5274 Embryophyte View MSA
123426401 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.03851 0.0 28.6198   Low
cufflinks 14.9784 0.0 49.1215    
cufflinks 27.2679 0.0 87.0287    
cufflinks 8.84967 0.0 24.7933   Low
cufflinks 10.5224 0.0 33.2667    
cufflinks 40.2234 0.0 161.168 High High
cufflinks 34.1338 0.0 132.666 High  
cufflinks 41.1221 0.0 170.99 High High
cufflinks 24.9945 0.0 89.9774    
cufflinks 29.2186 0.0 105.651    
cufflinks 10.3031 0.0 28.6476   Low

0 Strain