Gene : Phvul.006G059200 P. vulgaris v2.1
Defline:  (1 of 1) K14835 - ribosomal RNA methyltransferase Nop2 [EC:2.1.1.-] (NOP2) Genomic Order:  550
Name:  ? Phvul.006G059200 Secondary Identifier:  ? PAC:37172381
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G059200 0.5kb upstream 0.5kb upstream 6930 true Chr06: 16623409-16630338 Phaseolus vulgaris
Phvul.006G059200 0.5kb upstream 0.5kb upstream 500 false Chr06: 16629839-16630338 Phaseolus vulgaris
Phvul.006G059200 0.5kb downstream 0.5kb downstream 6930 true Chr06: 16622909-16629838 Phaseolus vulgaris
Phvul.006G059200 0.5kb downstream 0.5kb downstream 500 false Chr06: 16622909-16623408 Phaseolus vulgaris
Phvul.006G059200 1.0kb upstream 1.0kb upstream 7430 true Chr06: 16623409-16630838 Phaseolus vulgaris
Phvul.006G059200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16629839-16630838 Phaseolus vulgaris
Phvul.006G059200 1.0kb downstream 1.0kb downstream 7430 true Chr06: 16622409-16629838 Phaseolus vulgaris
Phvul.006G059200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16622409-16623408 Phaseolus vulgaris
Phvul.006G059200 2.0kb upstream 2.0kb upstream 8430 true Chr06: 16623409-16631838 Phaseolus vulgaris
Phvul.006G059200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16629839-16631838 Phaseolus vulgaris
Phvul.006G059200 2.0kb downstream 2.0kb downstream 8430 true Chr06: 16621409-16629838 Phaseolus vulgaris
Phvul.006G059200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16621409-16623408 Phaseolus vulgaris
Phvul.006G059200 5.0kb upstream 5.0kb upstream 11430 true Chr06: 16623409-16634838 Phaseolus vulgaris
Phvul.006G059200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16629839-16634838 Phaseolus vulgaris
Phvul.006G059200 5.0kb downstream 5.0kb downstream 11430 true Chr06: 16618409-16629838 Phaseolus vulgaris
Phvul.006G059200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16618409-16623408 Phaseolus vulgaris
Phvul.006G059200 10.0kb upstream 10.0kb upstream 16430 true Chr06: 16623409-16639838 Phaseolus vulgaris
Phvul.006G059200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16629839-16639838 Phaseolus vulgaris
Phvul.006G059200 10.0kb downstream 10.0kb downstream 16430 true Chr06: 16613409-16629838 Phaseolus vulgaris
Phvul.006G059200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16613409-16623408 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303204 5265 Fabidae View MSA
124073549 5270 Rosid View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.0355 0.0 21.218    
cufflinks 17.6147 0.0 45.5383    
cufflinks 9.55806 0.0 25.0617    
cufflinks 4.46511 0.0 12.4674   Low
cufflinks 12.2804 0.0 31.9369    
cufflinks 8.77697 0.0 23.0966    
cufflinks 17.5474 0.0 45.379    
cufflinks 21.1506 0.0 54.9049   High
cufflinks 20.8982 0.0 54.1869   High
cufflinks 16.0648 0.0 41.5295    
cufflinks 10.7245 0.0 27.9952    

0 Strain