Gene : Phvul.006G058100 P. vulgaris v2.1
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  540
Name:  ? Phvul.006G058100 Secondary Identifier:  ? PAC:37172389
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G058100 0.5kb upstream 0.5kb upstream 3686 true Chr06: 16525265-16528950 Phaseolus vulgaris
Phvul.006G058100 0.5kb upstream 0.5kb upstream 500 false Chr06: 16525265-16525764 Phaseolus vulgaris
Phvul.006G058100 0.5kb downstream 0.5kb downstream 3686 true Chr06: 16525765-16529450 Phaseolus vulgaris
Phvul.006G058100 0.5kb downstream 0.5kb downstream 500 false Chr06: 16528951-16529450 Phaseolus vulgaris
Phvul.006G058100 1.0kb upstream 1.0kb upstream 4186 true Chr06: 16524765-16528950 Phaseolus vulgaris
Phvul.006G058100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16524765-16525764 Phaseolus vulgaris
Phvul.006G058100 1.0kb downstream 1.0kb downstream 4186 true Chr06: 16525765-16529950 Phaseolus vulgaris
Phvul.006G058100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16528951-16529950 Phaseolus vulgaris
Phvul.006G058100 2.0kb upstream 2.0kb upstream 5186 true Chr06: 16523765-16528950 Phaseolus vulgaris
Phvul.006G058100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16523765-16525764 Phaseolus vulgaris
Phvul.006G058100 2.0kb downstream 2.0kb downstream 5186 true Chr06: 16525765-16530950 Phaseolus vulgaris
Phvul.006G058100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16528951-16530950 Phaseolus vulgaris
Phvul.006G058100 5.0kb upstream 5.0kb upstream 8186 true Chr06: 16520765-16528950 Phaseolus vulgaris
Phvul.006G058100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16520765-16525764 Phaseolus vulgaris
Phvul.006G058100 5.0kb downstream 5.0kb downstream 8186 true Chr06: 16525765-16533950 Phaseolus vulgaris
Phvul.006G058100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16528951-16533950 Phaseolus vulgaris
Phvul.006G058100 10.0kb upstream 10.0kb upstream 13186 true Chr06: 16515765-16528950 Phaseolus vulgaris
Phvul.006G058100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16515765-16525764 Phaseolus vulgaris
Phvul.006G058100 10.0kb downstream 10.0kb downstream 13186 true Chr06: 16525765-16538950 Phaseolus vulgaris
Phvul.006G058100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16528951-16538950 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 173.161 0.0 463.069 High High
cufflinks 93.9727 0.0 243.364 High  
cufflinks 74.8081 0.0 193.368 High Low
cufflinks 178.927 0.0 479.641 High High
cufflinks 132.54 0.0 346.159 High  
cufflinks 77.4574 0.0 200.213 High Low
cufflinks 98.9547 0.0 256.596 High  
cufflinks 95.9885 0.0 248.867 High  
cufflinks 107.503 0.0 279.265 High  
cufflinks 92.2088 0.0 238.694 High  
cufflinks 203.484 0.0 547.932 High High

0 Strain