Gene : Phvul.006G058400 P. vulgaris v2.1
Defline:  (1 of 6) PTHR13301//PTHR13301:SF54 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  543
Name:  ? Phvul.006G058400 Secondary Identifier:  ? PAC:37171692
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G058400 0.5kb upstream 0.5kb upstream 5449 true Chr06: 16533007-16538455 Phaseolus vulgaris
Phvul.006G058400 0.5kb upstream 0.5kb upstream 500 false Chr06: 16537956-16538455 Phaseolus vulgaris
Phvul.006G058400 0.5kb downstream 0.5kb downstream 5449 true Chr06: 16532507-16537955 Phaseolus vulgaris
Phvul.006G058400 0.5kb downstream 0.5kb downstream 500 false Chr06: 16532507-16533006 Phaseolus vulgaris
Phvul.006G058400 1.0kb upstream 1.0kb upstream 5949 true Chr06: 16533007-16538955 Phaseolus vulgaris
Phvul.006G058400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16537956-16538955 Phaseolus vulgaris
Phvul.006G058400 1.0kb downstream 1.0kb downstream 5949 true Chr06: 16532007-16537955 Phaseolus vulgaris
Phvul.006G058400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16532007-16533006 Phaseolus vulgaris
Phvul.006G058400 2.0kb upstream 2.0kb upstream 6949 true Chr06: 16533007-16539955 Phaseolus vulgaris
Phvul.006G058400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16537956-16539955 Phaseolus vulgaris
Phvul.006G058400 2.0kb downstream 2.0kb downstream 6949 true Chr06: 16531007-16537955 Phaseolus vulgaris
Phvul.006G058400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16531007-16533006 Phaseolus vulgaris
Phvul.006G058400 5.0kb upstream 5.0kb upstream 9949 true Chr06: 16533007-16542955 Phaseolus vulgaris
Phvul.006G058400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16537956-16542955 Phaseolus vulgaris
Phvul.006G058400 5.0kb downstream 5.0kb downstream 9949 true Chr06: 16528007-16537955 Phaseolus vulgaris
Phvul.006G058400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16528007-16533006 Phaseolus vulgaris
Phvul.006G058400 10.0kb upstream 10.0kb upstream 14949 true Chr06: 16533007-16547955 Phaseolus vulgaris
Phvul.006G058400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16537956-16547955 Phaseolus vulgaris
Phvul.006G058400 10.0kb downstream 10.0kb downstream 14949 true Chr06: 16523007-16537955 Phaseolus vulgaris
Phvul.006G058400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16523007-16533006 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315597 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.6189 0.0 10.426    
cufflinks 6.22634 0.0 17.0749    
cufflinks 28.5561 0.0 74.4078   High
cufflinks 0.895249 0.0 3.05676   Low
cufflinks 4.77524 0.0 13.488    
cufflinks 12.2183 0.0 31.9227    
cufflinks 0.538953 0.0 1.9267 Low Low
cufflinks 4.97707 0.0 13.8497    
cufflinks 0.326343 0.0 1.22258 Low Low
cufflinks 4.53456 0.0 12.806    
cufflinks 8.66799 0.0 23.2465    

0 Strain