Gene : Phvul.006G058600 P. vulgaris v2.1
Defline:  (1 of 6) PTHR13301//PTHR13301:SF54 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  544
Name:  ? Phvul.006G058600 Secondary Identifier:  ? PAC:37171626
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G058600 0.5kb upstream 0.5kb upstream 10012 true Chr06: 16553180-16563191 Phaseolus vulgaris
Phvul.006G058600 0.5kb upstream 0.5kb upstream 500 false Chr06: 16562692-16563191 Phaseolus vulgaris
Phvul.006G058600 0.5kb downstream 0.5kb downstream 10012 true Chr06: 16552680-16562691 Phaseolus vulgaris
Phvul.006G058600 0.5kb downstream 0.5kb downstream 500 false Chr06: 16552680-16553179 Phaseolus vulgaris
Phvul.006G058600 1.0kb upstream 1.0kb upstream 10512 true Chr06: 16553180-16563691 Phaseolus vulgaris
Phvul.006G058600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16562692-16563691 Phaseolus vulgaris
Phvul.006G058600 1.0kb downstream 1.0kb downstream 10512 true Chr06: 16552180-16562691 Phaseolus vulgaris
Phvul.006G058600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16552180-16553179 Phaseolus vulgaris
Phvul.006G058600 2.0kb upstream 2.0kb upstream 11512 true Chr06: 16553180-16564691 Phaseolus vulgaris
Phvul.006G058600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16562692-16564691 Phaseolus vulgaris
Phvul.006G058600 2.0kb downstream 2.0kb downstream 11512 true Chr06: 16551180-16562691 Phaseolus vulgaris
Phvul.006G058600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16551180-16553179 Phaseolus vulgaris
Phvul.006G058600 5.0kb upstream 5.0kb upstream 14512 true Chr06: 16553180-16567691 Phaseolus vulgaris
Phvul.006G058600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16562692-16567691 Phaseolus vulgaris
Phvul.006G058600 5.0kb downstream 5.0kb downstream 14512 true Chr06: 16548180-16562691 Phaseolus vulgaris
Phvul.006G058600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16548180-16553179 Phaseolus vulgaris
Phvul.006G058600 10.0kb upstream 10.0kb upstream 19512 true Chr06: 16553180-16572691 Phaseolus vulgaris
Phvul.006G058600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16562692-16572691 Phaseolus vulgaris
Phvul.006G058600 10.0kb downstream 10.0kb downstream 19512 true Chr06: 16543180-16562691 Phaseolus vulgaris
Phvul.006G058600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16543180-16553179 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315597 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.5326 0.0 166.427 High High
cufflinks 8.69894 0.0 23.4869    
cufflinks 2.04288 0.0 6.36003    
cufflinks 7.84044 0.0 21.5029    
cufflinks 3.11494 0.0 9.36429    
cufflinks 5.08317 0.0 14.3848    
cufflinks 3.16353 0.0 9.44295    
cufflinks 1.53273 0.0 4.93234    
cufflinks 1.14126 0.0 3.83963    
cufflinks 0.440109 0.0 1.6232   Low
cufflinks 3.80517 0.0 11.1777    

0 Strain