Gene : Phvul.006G060300 P. vulgaris v2.1
Defline:  (1 of 1) K11885 - DNA damage-inducible protein 1 (DDI1) Genomic Order:  574
Name:  ? Phvul.006G060300 Secondary Identifier:  ? PAC:37172853
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G060300 0.5kb upstream 0.5kb upstream 8175 true Chr06: 16865077-16873251 Phaseolus vulgaris
Phvul.006G060300 0.5kb upstream 0.5kb upstream 500 false Chr06: 16872752-16873251 Phaseolus vulgaris
Phvul.006G060300 0.5kb downstream 0.5kb downstream 8175 true Chr06: 16864577-16872751 Phaseolus vulgaris
Phvul.006G060300 0.5kb downstream 0.5kb downstream 500 false Chr06: 16864577-16865076 Phaseolus vulgaris
Phvul.006G060300 1.0kb upstream 1.0kb upstream 8675 true Chr06: 16865077-16873751 Phaseolus vulgaris
Phvul.006G060300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16872752-16873751 Phaseolus vulgaris
Phvul.006G060300 1.0kb downstream 1.0kb downstream 8675 true Chr06: 16864077-16872751 Phaseolus vulgaris
Phvul.006G060300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16864077-16865076 Phaseolus vulgaris
Phvul.006G060300 2.0kb upstream 2.0kb upstream 9675 true Chr06: 16865077-16874751 Phaseolus vulgaris
Phvul.006G060300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16872752-16874751 Phaseolus vulgaris
Phvul.006G060300 2.0kb downstream 2.0kb downstream 9675 true Chr06: 16863077-16872751 Phaseolus vulgaris
Phvul.006G060300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16863077-16865076 Phaseolus vulgaris
Phvul.006G060300 5.0kb upstream 5.0kb upstream 12675 true Chr06: 16865077-16877751 Phaseolus vulgaris
Phvul.006G060300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16872752-16877751 Phaseolus vulgaris
Phvul.006G060300 5.0kb downstream 5.0kb downstream 12675 true Chr06: 16860077-16872751 Phaseolus vulgaris
Phvul.006G060300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16860077-16865076 Phaseolus vulgaris
Phvul.006G060300 10.0kb upstream 10.0kb upstream 17675 true Chr06: 16865077-16882751 Phaseolus vulgaris
Phvul.006G060300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16872752-16882751 Phaseolus vulgaris
Phvul.006G060300 10.0kb downstream 10.0kb downstream 17675 true Chr06: 16855077-16872751 Phaseolus vulgaris
Phvul.006G060300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16855077-16865076 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303015 5265 Fabidae View MSA
124068287 5270 Rosid View MSA
123746680 5271 Pentapetalae View MSA
122792691 5272 Eudicot View MSA
122047571 5273 Angiosperm View MSA
121343926 5274 Embryophyte View MSA
123424063 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.0146 0.0 104.219 High  
cufflinks 28.6467 0.0 74.0524    
cufflinks 20.4276 0.0 52.9689   Low
cufflinks 53.4364 0.0 140.403 High High
cufflinks 28.1564 0.0 72.7831    
cufflinks 24.2964 0.0 62.8411    
cufflinks 36.3598 0.0 94.2892 High  
cufflinks 31.7969 0.0 82.2911 High  
cufflinks 45.4099 0.0 118.516 High High
cufflinks 19.556 0.0 50.8054   Low
cufflinks 32.9751 0.0 85.3185    

0 Strain