Gene : Phvul.010G119600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  1199
Name:  ? Phvul.010G119600 Secondary Identifier:  ? PAC:37142136
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5173 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PYRUVDEHYD-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G119600 0.5kb upstream 0.5kb upstream 3785 true Chr10: 39977644-39981428 Phaseolus vulgaris
Phvul.010G119600 0.5kb upstream 0.5kb upstream 500 false Chr10: 39980929-39981428 Phaseolus vulgaris
Phvul.010G119600 0.5kb downstream 0.5kb downstream 3785 true Chr10: 39977144-39980928 Phaseolus vulgaris
Phvul.010G119600 0.5kb downstream 0.5kb downstream 500 false Chr10: 39977144-39977643 Phaseolus vulgaris
Phvul.010G119600 1.0kb upstream 1.0kb upstream 4285 true Chr10: 39977644-39981928 Phaseolus vulgaris
Phvul.010G119600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 39980929-39981928 Phaseolus vulgaris
Phvul.010G119600 1.0kb downstream 1.0kb downstream 4285 true Chr10: 39976644-39980928 Phaseolus vulgaris
Phvul.010G119600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 39976644-39977643 Phaseolus vulgaris
Phvul.010G119600 2.0kb upstream 2.0kb upstream 5285 true Chr10: 39977644-39982928 Phaseolus vulgaris
Phvul.010G119600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 39980929-39982928 Phaseolus vulgaris
Phvul.010G119600 2.0kb downstream 2.0kb downstream 5285 true Chr10: 39975644-39980928 Phaseolus vulgaris
Phvul.010G119600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 39975644-39977643 Phaseolus vulgaris
Phvul.010G119600 5.0kb upstream 5.0kb upstream 8285 true Chr10: 39977644-39985928 Phaseolus vulgaris
Phvul.010G119600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 39980929-39985928 Phaseolus vulgaris
Phvul.010G119600 5.0kb downstream 5.0kb downstream 8285 true Chr10: 39972644-39980928 Phaseolus vulgaris
Phvul.010G119600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 39972644-39977643 Phaseolus vulgaris
Phvul.010G119600 10.0kb upstream 10.0kb upstream 13285 true Chr10: 39977644-39990928 Phaseolus vulgaris
Phvul.010G119600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 39980929-39990928 Phaseolus vulgaris
Phvul.010G119600 10.0kb downstream 10.0kb downstream 13285 true Chr10: 39967644-39980928 Phaseolus vulgaris
Phvul.010G119600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 39967644-39977643 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309169 5265 Fabidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.322 0.0 119.841 High  
cufflinks 57.991 0.0 156.304 High  
cufflinks 165.313 0.0 506.228 High High
cufflinks 176.545 0.0 540.413 High High
cufflinks 70.945 0.0 193.792 High  
cufflinks 131.793 0.0 389.631 High High
cufflinks 30.7896 0.0 79.9807 High Low
cufflinks 25.919 0.0 67.0709   Low
cufflinks 45.78 0.0 121.167 High  
cufflinks 27.5257 0.0 71.2409   Low
cufflinks 87.8678 0.0 245.752 High  

0 Strain