Gene : Phvul.010G120200 P. vulgaris v2.1
Defline:  (1 of 18) K13066 - caffeic acid 3-O-methyltransferase (E2.1.1.68, COMT) Genomic Order:  1205
Name:  ? Phvul.010G120200 Secondary Identifier:  ? PAC:37142471
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G120200 0.5kb upstream 0.5kb upstream 2719 true Chr10: 40065384-40068102 Phaseolus vulgaris
Phvul.010G120200 0.5kb upstream 0.5kb upstream 500 false Chr10: 40067603-40068102 Phaseolus vulgaris
Phvul.010G120200 0.5kb downstream 0.5kb downstream 2719 true Chr10: 40064884-40067602 Phaseolus vulgaris
Phvul.010G120200 0.5kb downstream 0.5kb downstream 500 false Chr10: 40064884-40065383 Phaseolus vulgaris
Phvul.010G120200 1.0kb upstream 1.0kb upstream 3219 true Chr10: 40065384-40068602 Phaseolus vulgaris
Phvul.010G120200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40067603-40068602 Phaseolus vulgaris
Phvul.010G120200 1.0kb downstream 1.0kb downstream 3219 true Chr10: 40064384-40067602 Phaseolus vulgaris
Phvul.010G120200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40064384-40065383 Phaseolus vulgaris
Phvul.010G120200 2.0kb upstream 2.0kb upstream 4219 true Chr10: 40065384-40069602 Phaseolus vulgaris
Phvul.010G120200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40067603-40069602 Phaseolus vulgaris
Phvul.010G120200 2.0kb downstream 2.0kb downstream 4219 true Chr10: 40063384-40067602 Phaseolus vulgaris
Phvul.010G120200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40063384-40065383 Phaseolus vulgaris
Phvul.010G120200 5.0kb upstream 5.0kb upstream 7219 true Chr10: 40065384-40072602 Phaseolus vulgaris
Phvul.010G120200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40067603-40072602 Phaseolus vulgaris
Phvul.010G120200 5.0kb downstream 5.0kb downstream 7219 true Chr10: 40060384-40067602 Phaseolus vulgaris
Phvul.010G120200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40060384-40065383 Phaseolus vulgaris
Phvul.010G120200 10.0kb upstream 10.0kb upstream 12219 true Chr10: 40065384-40077602 Phaseolus vulgaris
Phvul.010G120200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40067603-40077602 Phaseolus vulgaris
Phvul.010G120200 10.0kb downstream 10.0kb downstream 12219 true Chr10: 40055384-40067602 Phaseolus vulgaris
Phvul.010G120200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40055384-40065383 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031356 5273 Angiosperm View MSA
122296446 5265 Fabidae View MSA
124035649 5270 Rosid View MSA
123750385 5271 Pentapetalae View MSA
122795177 5272 Eudicot View MSA
123429068 5275 Viridiplantae View MSA
121350689 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.77792 0.0 6.02335    
cufflinks 0.346264 0.0 1.35812 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.668411 0.0 2.50084    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0366806 0.0 0.176856 Low Low
cufflinks 12.6525 0.0 34.6539   High
cufflinks 14.9525 0.0 40.3031   High
cufflinks 5.66864 0.0 16.8208    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0292913 0.0 0.145315 Low Low

0 Strain