Gene : Phvul.010G120000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11969:SF29 - TRANSCRIPTION FACTOR BHLH57-RELATED Genomic Order:  1203
Name:  ? Phvul.010G120000 Secondary Identifier:  ? PAC:37143949
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G120000 0.5kb upstream 0.5kb upstream 3881 true Chr10: 40044405-40048285 Phaseolus vulgaris
Phvul.010G120000 0.5kb upstream 0.5kb upstream 500 false Chr10: 40044405-40044904 Phaseolus vulgaris
Phvul.010G120000 0.5kb downstream 0.5kb downstream 3881 true Chr10: 40044905-40048785 Phaseolus vulgaris
Phvul.010G120000 0.5kb downstream 0.5kb downstream 500 false Chr10: 40048286-40048785 Phaseolus vulgaris
Phvul.010G120000 1.0kb upstream 1.0kb upstream 4381 true Chr10: 40043905-40048285 Phaseolus vulgaris
Phvul.010G120000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40043905-40044904 Phaseolus vulgaris
Phvul.010G120000 1.0kb downstream 1.0kb downstream 4381 true Chr10: 40044905-40049285 Phaseolus vulgaris
Phvul.010G120000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40048286-40049285 Phaseolus vulgaris
Phvul.010G120000 2.0kb upstream 2.0kb upstream 5381 true Chr10: 40042905-40048285 Phaseolus vulgaris
Phvul.010G120000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40042905-40044904 Phaseolus vulgaris
Phvul.010G120000 2.0kb downstream 2.0kb downstream 5381 true Chr10: 40044905-40050285 Phaseolus vulgaris
Phvul.010G120000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40048286-40050285 Phaseolus vulgaris
Phvul.010G120000 5.0kb upstream 5.0kb upstream 8381 true Chr10: 40039905-40048285 Phaseolus vulgaris
Phvul.010G120000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40039905-40044904 Phaseolus vulgaris
Phvul.010G120000 5.0kb downstream 5.0kb downstream 8381 true Chr10: 40044905-40053285 Phaseolus vulgaris
Phvul.010G120000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40048286-40053285 Phaseolus vulgaris
Phvul.010G120000 10.0kb upstream 10.0kb upstream 13381 true Chr10: 40034905-40048285 Phaseolus vulgaris
Phvul.010G120000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40034905-40044904 Phaseolus vulgaris
Phvul.010G120000 10.0kb downstream 10.0kb downstream 13381 true Chr10: 40044905-40058285 Phaseolus vulgaris
Phvul.010G120000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40048286-40058285 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304826 5265 Fabidae View MSA
124067472 5270 Rosid View MSA
123749285 5271 Pentapetalae View MSA
122794835 5272 Eudicot View MSA
122051154 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.3003 0.0 9.25379    
cufflinks 16.9426 0.0 56.8384    
cufflinks 62.9637 0.0 208.256 High High
cufflinks 0.978384 0.0 5.12501    
cufflinks 3.53865 0.0 14.0487    
cufflinks 42.5797 0.0 132.333 High High
cufflinks 0.237575 0.0 1.60452 Low  
cufflinks 0.20449 0.0 1.47344 Low Low
cufflinks 0.0655679 0.0 0.278027 Low Low
cufflinks 0.879269 0.0 4.59674    
cufflinks 2.7891 0.0 10.6505    

0 Strain