Gene : Phvul.010G123200 P. vulgaris v2.1
Defline:  (1 of 1) K00814 - alanine transaminase (GPT, ALT) Genomic Order:  1238
Name:  ? Phvul.010G123200 Secondary Identifier:  ? PAC:37143893
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ALANINE-DEG3-PWY Phaseolus vulgaris pathologic  
Pvulgaris ALANINE-SYN2-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-7115 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7117 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G123200 0.5kb upstream 0.5kb upstream 6928 true Chr10: 40428057-40434984 Phaseolus vulgaris
Phvul.010G123200 0.5kb upstream 0.5kb upstream 500 false Chr10: 40428057-40428556 Phaseolus vulgaris
Phvul.010G123200 0.5kb downstream 0.5kb downstream 6928 true Chr10: 40428557-40435484 Phaseolus vulgaris
Phvul.010G123200 0.5kb downstream 0.5kb downstream 500 false Chr10: 40434985-40435484 Phaseolus vulgaris
Phvul.010G123200 1.0kb upstream 1.0kb upstream 7428 true Chr10: 40427557-40434984 Phaseolus vulgaris
Phvul.010G123200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40427557-40428556 Phaseolus vulgaris
Phvul.010G123200 1.0kb downstream 1.0kb downstream 7428 true Chr10: 40428557-40435984 Phaseolus vulgaris
Phvul.010G123200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40434985-40435984 Phaseolus vulgaris
Phvul.010G123200 2.0kb upstream 2.0kb upstream 8428 true Chr10: 40426557-40434984 Phaseolus vulgaris
Phvul.010G123200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40426557-40428556 Phaseolus vulgaris
Phvul.010G123200 2.0kb downstream 2.0kb downstream 8428 true Chr10: 40428557-40436984 Phaseolus vulgaris
Phvul.010G123200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40434985-40436984 Phaseolus vulgaris
Phvul.010G123200 5.0kb upstream 5.0kb upstream 11428 true Chr10: 40423557-40434984 Phaseolus vulgaris
Phvul.010G123200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40423557-40428556 Phaseolus vulgaris
Phvul.010G123200 5.0kb downstream 5.0kb downstream 11428 true Chr10: 40428557-40439984 Phaseolus vulgaris
Phvul.010G123200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40434985-40439984 Phaseolus vulgaris
Phvul.010G123200 10.0kb upstream 10.0kb upstream 16428 true Chr10: 40418557-40434984 Phaseolus vulgaris
Phvul.010G123200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40418557-40428556 Phaseolus vulgaris
Phvul.010G123200 10.0kb downstream 10.0kb downstream 16428 true Chr10: 40428557-40444984 Phaseolus vulgaris
Phvul.010G123200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40434985-40444984 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301805 5265 Fabidae View MSA
124064256 5270 Rosid View MSA
123749170 5271 Pentapetalae View MSA
122793882 5272 Eudicot View MSA
122043472 5273 Angiosperm View MSA
121347513 5274 Embryophyte View MSA
123427750 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 84.7944 0.0 237.254 High High
cufflinks 36.9937 0.0 96.6306 High  
cufflinks 12.3633 0.0 32.4766   Low
cufflinks 86.7539 0.0 241.627 High High
cufflinks 24.0619 0.0 62.1957    
cufflinks 12.7687 0.0 33.5198   Low
cufflinks 27.081 0.0 70.1039    
cufflinks 40.7425 0.0 107.194 High  
cufflinks 34.472 0.0 89.7576 High  
cufflinks 58.6249 0.0 157.958 High  
cufflinks 27.3873 0.0 70.8645    

0 Strain