Gene : Phvul.010G121400 P. vulgaris v2.1
Defline:  (1 of 3) K08908 - light-harvesting complex I chlorophyll a/b binding protein 2 (LHCA2) Genomic Order:  1219
Name:  ? Phvul.010G121400 Secondary Identifier:  ? PAC:37143538
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G121400 0.5kb upstream 0.5kb upstream 2926 true Chr10: 40260065-40262990 Phaseolus vulgaris
Phvul.010G121400 0.5kb upstream 0.5kb upstream 500 false Chr10: 40260065-40260564 Phaseolus vulgaris
Phvul.010G121400 0.5kb downstream 0.5kb downstream 2926 true Chr10: 40260565-40263490 Phaseolus vulgaris
Phvul.010G121400 0.5kb downstream 0.5kb downstream 500 false Chr10: 40262991-40263490 Phaseolus vulgaris
Phvul.010G121400 1.0kb upstream 1.0kb upstream 3426 true Chr10: 40259565-40262990 Phaseolus vulgaris
Phvul.010G121400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40259565-40260564 Phaseolus vulgaris
Phvul.010G121400 1.0kb downstream 1.0kb downstream 3426 true Chr10: 40260565-40263990 Phaseolus vulgaris
Phvul.010G121400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40262991-40263990 Phaseolus vulgaris
Phvul.010G121400 2.0kb upstream 2.0kb upstream 4426 true Chr10: 40258565-40262990 Phaseolus vulgaris
Phvul.010G121400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40258565-40260564 Phaseolus vulgaris
Phvul.010G121400 2.0kb downstream 2.0kb downstream 4426 true Chr10: 40260565-40264990 Phaseolus vulgaris
Phvul.010G121400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40262991-40264990 Phaseolus vulgaris
Phvul.010G121400 5.0kb upstream 5.0kb upstream 7426 true Chr10: 40255565-40262990 Phaseolus vulgaris
Phvul.010G121400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40255565-40260564 Phaseolus vulgaris
Phvul.010G121400 5.0kb downstream 5.0kb downstream 7426 true Chr10: 40260565-40267990 Phaseolus vulgaris
Phvul.010G121400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40262991-40267990 Phaseolus vulgaris
Phvul.010G121400 10.0kb upstream 10.0kb upstream 12426 true Chr10: 40250565-40262990 Phaseolus vulgaris
Phvul.010G121400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40250565-40260564 Phaseolus vulgaris
Phvul.010G121400 10.0kb downstream 10.0kb downstream 12426 true Chr10: 40260565-40272990 Phaseolus vulgaris
Phvul.010G121400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40262991-40272990 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309685 5265 Fabidae View MSA
124065144 5270 Rosid View MSA
123742469 5271 Pentapetalae View MSA
122790167 5272 Eudicot View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 265.193 0.0 823.445 High  
cufflinks 332.969 0.0 1081.15 High  
cufflinks 4447.81 0.0 29328.8 High High
cufflinks 160.909 0.0 464.715 High  
cufflinks 430.347 0.0 1469.1 High  
cufflinks 1152.83 0.0 5069.23 High  
cufflinks 0.285196 0.0 1.11776 Low Low
cufflinks 0.0590952 0.0 0.266159 Low Low
cufflinks 0.475492 0.0 1.78974 Low Low
cufflinks 196.356 0.0 581.719 High  
cufflinks 265.877 0.0 827.483 High  

0 Strain