Gene : Phvul.006G060600 P. vulgaris v2.1
Defline:  (1 of 4) K02949 - small subunit ribosomal protein S11e (RP-S11e, RPS11) Genomic Order:  577
Name:  ? Phvul.006G060600 Secondary Identifier:  ? PAC:37171322
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G060600 0.5kb upstream 0.5kb upstream 2132 true Chr06: 16911194-16913325 Phaseolus vulgaris
Phvul.006G060600 0.5kb upstream 0.5kb upstream 500 false Chr06: 16912826-16913325 Phaseolus vulgaris
Phvul.006G060600 0.5kb downstream 0.5kb downstream 2132 true Chr06: 16910694-16912825 Phaseolus vulgaris
Phvul.006G060600 0.5kb downstream 0.5kb downstream 500 false Chr06: 16910694-16911193 Phaseolus vulgaris
Phvul.006G060600 1.0kb upstream 1.0kb upstream 2632 true Chr06: 16911194-16913825 Phaseolus vulgaris
Phvul.006G060600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16912826-16913825 Phaseolus vulgaris
Phvul.006G060600 1.0kb downstream 1.0kb downstream 2632 true Chr06: 16910194-16912825 Phaseolus vulgaris
Phvul.006G060600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16910194-16911193 Phaseolus vulgaris
Phvul.006G060600 2.0kb upstream 2.0kb upstream 3632 true Chr06: 16911194-16914825 Phaseolus vulgaris
Phvul.006G060600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16912826-16914825 Phaseolus vulgaris
Phvul.006G060600 2.0kb downstream 2.0kb downstream 3632 true Chr06: 16909194-16912825 Phaseolus vulgaris
Phvul.006G060600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16909194-16911193 Phaseolus vulgaris
Phvul.006G060600 5.0kb upstream 5.0kb upstream 6632 true Chr06: 16911194-16917825 Phaseolus vulgaris
Phvul.006G060600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16912826-16917825 Phaseolus vulgaris
Phvul.006G060600 5.0kb downstream 5.0kb downstream 6632 true Chr06: 16906194-16912825 Phaseolus vulgaris
Phvul.006G060600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16906194-16911193 Phaseolus vulgaris
Phvul.006G060600 10.0kb upstream 10.0kb upstream 11632 true Chr06: 16911194-16922825 Phaseolus vulgaris
Phvul.006G060600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16912826-16922825 Phaseolus vulgaris
Phvul.006G060600 10.0kb downstream 10.0kb downstream 11632 true Chr06: 16901194-16912825 Phaseolus vulgaris
Phvul.006G060600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16901194-16911193 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308230 5265 Fabidae View MSA
124061997 5270 Rosid View MSA
123740255 5271 Pentapetalae View MSA
122794687 5272 Eudicot View MSA
122044220 5273 Angiosperm View MSA
121344694 5274 Embryophyte View MSA
123428242 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.9231 0.0 116.732 High  
cufflinks 62.9176 0.0 162.631 High High
cufflinks 36.3657 0.0 95.2421    
cufflinks 71.7503 0.0 185.518 High High
cufflinks 43.9176 0.0 114.509 High  
cufflinks 34.0999 0.0 89.5617 High  
cufflinks 39.5311 0.0 103.122 High  
cufflinks 52.6777 0.0 136.27 High  
cufflinks 54.6527 0.0 141.386 High  
cufflinks 20.5748 0.0 56.1635   Low
cufflinks 43.4445 0.0 113.103 High  

0 Strain