Gene : Phvul.010G102600 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1029
Name:  ? Phvul.010G102600 Secondary Identifier:  ? PAC:37142815
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G102600 0.5kb upstream 0.5kb upstream 6032 true Chr10: 37167821-37173852 Phaseolus vulgaris
Phvul.010G102600 0.5kb upstream 0.5kb upstream 500 false Chr10: 37167821-37168320 Phaseolus vulgaris
Phvul.010G102600 0.5kb downstream 0.5kb downstream 6032 true Chr10: 37168321-37174352 Phaseolus vulgaris
Phvul.010G102600 0.5kb downstream 0.5kb downstream 500 false Chr10: 37173853-37174352 Phaseolus vulgaris
Phvul.010G102600 1.0kb upstream 1.0kb upstream 6532 true Chr10: 37167321-37173852 Phaseolus vulgaris
Phvul.010G102600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 37167321-37168320 Phaseolus vulgaris
Phvul.010G102600 1.0kb downstream 1.0kb downstream 6532 true Chr10: 37168321-37174852 Phaseolus vulgaris
Phvul.010G102600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 37173853-37174852 Phaseolus vulgaris
Phvul.010G102600 2.0kb upstream 2.0kb upstream 7532 true Chr10: 37166321-37173852 Phaseolus vulgaris
Phvul.010G102600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 37166321-37168320 Phaseolus vulgaris
Phvul.010G102600 2.0kb downstream 2.0kb downstream 7532 true Chr10: 37168321-37175852 Phaseolus vulgaris
Phvul.010G102600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 37173853-37175852 Phaseolus vulgaris
Phvul.010G102600 5.0kb upstream 5.0kb upstream 10532 true Chr10: 37163321-37173852 Phaseolus vulgaris
Phvul.010G102600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 37163321-37168320 Phaseolus vulgaris
Phvul.010G102600 5.0kb downstream 5.0kb downstream 10532 true Chr10: 37168321-37178852 Phaseolus vulgaris
Phvul.010G102600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 37173853-37178852 Phaseolus vulgaris
Phvul.010G102600 10.0kb upstream 10.0kb upstream 15532 true Chr10: 37158321-37173852 Phaseolus vulgaris
Phvul.010G102600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 37158321-37168320 Phaseolus vulgaris
Phvul.010G102600 10.0kb downstream 10.0kb downstream 15532 true Chr10: 37168321-37183852 Phaseolus vulgaris
Phvul.010G102600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 37173853-37183852 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302355 5265 Fabidae View MSA
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.509793 0.0 2.78061   Low
cufflinks 0.628905 0.0 3.14649    
cufflinks 1.75346 0.0 6.7634   High
cufflinks 0.350953 0.0 1.55409 Low Low
cufflinks 1.12971 0.0 3.8553    
cufflinks 1.01922 0.0 3.52488    
cufflinks 1.12022 0.0 5.09576    
cufflinks 0.943298 0.0 3.2632    
cufflinks 0.848808 0.0 3.03469    
cufflinks 0.750418 0.0 2.75864    
cufflinks 0.587758 0.0 2.40636    

0 Strain