Gene : Phvul.010G112800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24031:SF265 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 25-RELATED Genomic Order:  1128
Name:  ? Phvul.010G112800 Secondary Identifier:  ? PAC:37142554
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G112800 0.5kb upstream 0.5kb upstream 6388 true Chr10: 38802862-38809249 Phaseolus vulgaris
Phvul.010G112800 0.5kb upstream 0.5kb upstream 500 false Chr10: 38808750-38809249 Phaseolus vulgaris
Phvul.010G112800 0.5kb downstream 0.5kb downstream 6388 true Chr10: 38802362-38808749 Phaseolus vulgaris
Phvul.010G112800 0.5kb downstream 0.5kb downstream 500 false Chr10: 38802362-38802861 Phaseolus vulgaris
Phvul.010G112800 1.0kb upstream 1.0kb upstream 6888 true Chr10: 38802862-38809749 Phaseolus vulgaris
Phvul.010G112800 1.0kb upstream 1.0kb upstream 1000 false Chr10: 38808750-38809749 Phaseolus vulgaris
Phvul.010G112800 1.0kb downstream 1.0kb downstream 6888 true Chr10: 38801862-38808749 Phaseolus vulgaris
Phvul.010G112800 1.0kb downstream 1.0kb downstream 1000 false Chr10: 38801862-38802861 Phaseolus vulgaris
Phvul.010G112800 2.0kb upstream 2.0kb upstream 7888 true Chr10: 38802862-38810749 Phaseolus vulgaris
Phvul.010G112800 2.0kb upstream 2.0kb upstream 2000 false Chr10: 38808750-38810749 Phaseolus vulgaris
Phvul.010G112800 2.0kb downstream 2.0kb downstream 7888 true Chr10: 38800862-38808749 Phaseolus vulgaris
Phvul.010G112800 2.0kb downstream 2.0kb downstream 2000 false Chr10: 38800862-38802861 Phaseolus vulgaris
Phvul.010G112800 5.0kb upstream 5.0kb upstream 10888 true Chr10: 38802862-38813749 Phaseolus vulgaris
Phvul.010G112800 5.0kb upstream 5.0kb upstream 5000 false Chr10: 38808750-38813749 Phaseolus vulgaris
Phvul.010G112800 5.0kb downstream 5.0kb downstream 10888 true Chr10: 38797862-38808749 Phaseolus vulgaris
Phvul.010G112800 5.0kb downstream 5.0kb downstream 5000 false Chr10: 38797862-38802861 Phaseolus vulgaris
Phvul.010G112800 10.0kb upstream 10.0kb upstream 15888 true Chr10: 38802862-38818749 Phaseolus vulgaris
Phvul.010G112800 10.0kb upstream 10.0kb upstream 10000 false Chr10: 38808750-38818749 Phaseolus vulgaris
Phvul.010G112800 10.0kb downstream 10.0kb downstream 15888 true Chr10: 38792862-38808749 Phaseolus vulgaris
Phvul.010G112800 10.0kb downstream 10.0kb downstream 10000 false Chr10: 38792862-38802861 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311922 5265 Fabidae View MSA
124063521 5270 Rosid View MSA
123738215 5271 Pentapetalae View MSA
122794289 5272 Eudicot View MSA
122047115 5273 Angiosperm View MSA
121350061 5274 Embryophyte View MSA
123424072 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.3054 0.0 26.8422    
cufflinks 17.4204 0.0 45.0448   High
cufflinks 15.8343 0.0 40.9303    
cufflinks 8.92216 0.0 23.4674    
cufflinks 14.2014 0.0 36.7346    
cufflinks 23.4174 0.0 60.9469   High
cufflinks 9.86949 0.0 25.7131    
cufflinks 10.0488 0.0 26.2037    
cufflinks 10.6759 0.0 27.7565    
cufflinks 7.78254 0.0 20.6141   Low
cufflinks 11.8846 0.0 30.8331    

0 Strain