Gene : Phvul.006G053600 P. vulgaris v2.1
Defline:  (1 of 1) K03027 - DNA-directed RNA polymerases I and III subunit RPAC1 (RPC40, POLR1C) Genomic Order:  489
Name:  ? Phvul.006G053600 Secondary Identifier:  ? PAC:37174071
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G053600 0.5kb upstream 0.5kb upstream 6011 true Chr06: 15911643-15917653 Phaseolus vulgaris
Phvul.006G053600 0.5kb upstream 0.5kb upstream 500 false Chr06: 15911643-15912142 Phaseolus vulgaris
Phvul.006G053600 0.5kb downstream 0.5kb downstream 6011 true Chr06: 15912143-15918153 Phaseolus vulgaris
Phvul.006G053600 0.5kb downstream 0.5kb downstream 500 false Chr06: 15917654-15918153 Phaseolus vulgaris
Phvul.006G053600 1.0kb upstream 1.0kb upstream 6511 true Chr06: 15911143-15917653 Phaseolus vulgaris
Phvul.006G053600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 15911143-15912142 Phaseolus vulgaris
Phvul.006G053600 1.0kb downstream 1.0kb downstream 6511 true Chr06: 15912143-15918653 Phaseolus vulgaris
Phvul.006G053600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 15917654-15918653 Phaseolus vulgaris
Phvul.006G053600 2.0kb upstream 2.0kb upstream 7511 true Chr06: 15910143-15917653 Phaseolus vulgaris
Phvul.006G053600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 15910143-15912142 Phaseolus vulgaris
Phvul.006G053600 2.0kb downstream 2.0kb downstream 7511 true Chr06: 15912143-15919653 Phaseolus vulgaris
Phvul.006G053600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 15917654-15919653 Phaseolus vulgaris
Phvul.006G053600 5.0kb upstream 5.0kb upstream 10511 true Chr06: 15907143-15917653 Phaseolus vulgaris
Phvul.006G053600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 15907143-15912142 Phaseolus vulgaris
Phvul.006G053600 5.0kb downstream 5.0kb downstream 10511 true Chr06: 15912143-15922653 Phaseolus vulgaris
Phvul.006G053600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 15917654-15922653 Phaseolus vulgaris
Phvul.006G053600 10.0kb upstream 10.0kb upstream 15511 true Chr06: 15902143-15917653 Phaseolus vulgaris
Phvul.006G053600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 15902143-15912142 Phaseolus vulgaris
Phvul.006G053600 10.0kb downstream 10.0kb downstream 15511 true Chr06: 15912143-15927653 Phaseolus vulgaris
Phvul.006G053600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 15917654-15927653 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302392 5265 Fabidae View MSA
124063723 5270 Rosid View MSA
123738682 5271 Pentapetalae View MSA
122789471 5272 Eudicot View MSA
122043698 5273 Angiosperm View MSA
121344052 5274 Embryophyte View MSA
123424148 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.17316 0.0 17.6524    
cufflinks 7.53957 0.0 21.1847   High
cufflinks 3.12666 0.0 9.64909   Low
cufflinks 4.62363 0.0 13.7701    
cufflinks 4.3738 0.0 13.1545    
cufflinks 3.20013 0.0 9.86533   Low
cufflinks 5.03966 0.0 14.7281    
cufflinks 6.62125 0.0 18.6982   High
cufflinks 5.41726 0.0 15.7441    
cufflinks 5.71439 0.0 16.5551    
cufflinks 5.04319 0.0 14.8667    

0 Strain