Gene : Phvul.010G097000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31500:SF10 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  977
Name:  ? Phvul.010G097000 Secondary Identifier:  ? PAC:37144249
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G097000 0.5kb upstream 0.5kb upstream 5952 true Chr10: 36212886-36218837 Phaseolus vulgaris
Phvul.010G097000 0.5kb upstream 0.5kb upstream 500 false Chr10: 36218338-36218837 Phaseolus vulgaris
Phvul.010G097000 0.5kb downstream 0.5kb downstream 5952 true Chr10: 36212386-36218337 Phaseolus vulgaris
Phvul.010G097000 0.5kb downstream 0.5kb downstream 500 false Chr10: 36212386-36212885 Phaseolus vulgaris
Phvul.010G097000 1.0kb upstream 1.0kb upstream 6452 true Chr10: 36212886-36219337 Phaseolus vulgaris
Phvul.010G097000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 36218338-36219337 Phaseolus vulgaris
Phvul.010G097000 1.0kb downstream 1.0kb downstream 6452 true Chr10: 36211886-36218337 Phaseolus vulgaris
Phvul.010G097000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 36211886-36212885 Phaseolus vulgaris
Phvul.010G097000 2.0kb upstream 2.0kb upstream 7452 true Chr10: 36212886-36220337 Phaseolus vulgaris
Phvul.010G097000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 36218338-36220337 Phaseolus vulgaris
Phvul.010G097000 2.0kb downstream 2.0kb downstream 7452 true Chr10: 36210886-36218337 Phaseolus vulgaris
Phvul.010G097000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 36210886-36212885 Phaseolus vulgaris
Phvul.010G097000 5.0kb upstream 5.0kb upstream 10452 true Chr10: 36212886-36223337 Phaseolus vulgaris
Phvul.010G097000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 36218338-36223337 Phaseolus vulgaris
Phvul.010G097000 5.0kb downstream 5.0kb downstream 10452 true Chr10: 36207886-36218337 Phaseolus vulgaris
Phvul.010G097000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 36207886-36212885 Phaseolus vulgaris
Phvul.010G097000 10.0kb upstream 10.0kb upstream 15452 true Chr10: 36212886-36228337 Phaseolus vulgaris
Phvul.010G097000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 36218338-36228337 Phaseolus vulgaris
Phvul.010G097000 10.0kb downstream 10.0kb downstream 15452 true Chr10: 36202886-36218337 Phaseolus vulgaris
Phvul.010G097000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 36202886-36212885 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041209 5273 Angiosperm View MSA
122311157 5265 Fabidae View MSA
124064168 5270 Rosid View MSA
123741988 5271 Pentapetalae View MSA
122789787 5272 Eudicot View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.7261 0.0 48.491    
cufflinks 31.5628 0.0 81.9448    
cufflinks 25.0987 0.0 64.8953    
cufflinks 18.2368 0.0 47.3224    
cufflinks 24.0585 0.0 62.1873    
cufflinks 27.0774 0.0 70.0675    
cufflinks 5.39244 0.0 15.1617    
cufflinks 5.65789 0.0 15.794    
cufflinks 1.36472 0.0 4.47922   Low
cufflinks 10.4853 0.0 27.9114    
cufflinks 30.728 0.0 79.6531    

0 Strain