Gene : Phvul.006G029100 P. vulgaris v2.1
Defline:  (1 of 1) 2.6.1.45 - Serine--glyoxylate transaminase / SGAT Genomic Order:  234
Name:  ? Phvul.006G029100 Secondary Identifier:  ? PAC:37173576
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYSYN-ALA-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G029100 0.5kb upstream 0.5kb upstream 5183 true Chr06: 11013617-11018799 Phaseolus vulgaris
Phvul.006G029100 0.5kb upstream 0.5kb upstream 500 false Chr06: 11013617-11014116 Phaseolus vulgaris
Phvul.006G029100 0.5kb downstream 0.5kb downstream 5183 true Chr06: 11014117-11019299 Phaseolus vulgaris
Phvul.006G029100 0.5kb downstream 0.5kb downstream 500 false Chr06: 11018800-11019299 Phaseolus vulgaris
Phvul.006G029100 1.0kb upstream 1.0kb upstream 5683 true Chr06: 11013117-11018799 Phaseolus vulgaris
Phvul.006G029100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 11013117-11014116 Phaseolus vulgaris
Phvul.006G029100 1.0kb downstream 1.0kb downstream 5683 true Chr06: 11014117-11019799 Phaseolus vulgaris
Phvul.006G029100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 11018800-11019799 Phaseolus vulgaris
Phvul.006G029100 2.0kb upstream 2.0kb upstream 6683 true Chr06: 11012117-11018799 Phaseolus vulgaris
Phvul.006G029100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 11012117-11014116 Phaseolus vulgaris
Phvul.006G029100 2.0kb downstream 2.0kb downstream 6683 true Chr06: 11014117-11020799 Phaseolus vulgaris
Phvul.006G029100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 11018800-11020799 Phaseolus vulgaris
Phvul.006G029100 5.0kb upstream 5.0kb upstream 9683 true Chr06: 11009117-11018799 Phaseolus vulgaris
Phvul.006G029100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 11009117-11014116 Phaseolus vulgaris
Phvul.006G029100 5.0kb downstream 5.0kb downstream 9683 true Chr06: 11014117-11023799 Phaseolus vulgaris
Phvul.006G029100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 11018800-11023799 Phaseolus vulgaris
Phvul.006G029100 10.0kb upstream 10.0kb upstream 14683 true Chr06: 11004117-11018799 Phaseolus vulgaris
Phvul.006G029100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 11004117-11014116 Phaseolus vulgaris
Phvul.006G029100 10.0kb downstream 10.0kb downstream 14683 true Chr06: 11014117-11028799 Phaseolus vulgaris
Phvul.006G029100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 11018800-11028799 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301665 5265 Fabidae View MSA
124065045 5270 Rosid View MSA
123739482 5271 Pentapetalae View MSA
122787135 5272 Eudicot View MSA
122044965 5273 Angiosperm View MSA
121345609 5274 Embryophyte View MSA
123427199 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.1914 0.0 59.2257    
cufflinks 35.619 0.0 103.495 High  
cufflinks 1004.16 0.0 9070.57 High High
cufflinks 19.8371 0.0 64.8199    
cufflinks 70.6186 0.0 216.382 High  
cufflinks 401.446 0.0 2078.53 High High
cufflinks 0.100561 0.0 0.43514 Low Low
cufflinks 0.127035 0.0 0.533693 Low Low
cufflinks 0.78269 0.0 4.49851    
cufflinks 137.211 0.0 485.512 High  
cufflinks 28.9238 0.0 84.2768    

0 Strain