Gene : Phvul.006G033900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33210:SF6 - PROTODERMAL FACTOR 1 Genomic Order:  293
Name:  ? Phvul.006G033900 Secondary Identifier:  ? PAC:37173768
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G033900 0.5kb upstream 0.5kb upstream 2325 true Chr06: 12767422-12769746 Phaseolus vulgaris
Phvul.006G033900 0.5kb upstream 0.5kb upstream 500 false Chr06: 12767422-12767921 Phaseolus vulgaris
Phvul.006G033900 0.5kb downstream 0.5kb downstream 2325 true Chr06: 12767922-12770246 Phaseolus vulgaris
Phvul.006G033900 0.5kb downstream 0.5kb downstream 500 false Chr06: 12769747-12770246 Phaseolus vulgaris
Phvul.006G033900 1.0kb upstream 1.0kb upstream 2825 true Chr06: 12766922-12769746 Phaseolus vulgaris
Phvul.006G033900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 12766922-12767921 Phaseolus vulgaris
Phvul.006G033900 1.0kb downstream 1.0kb downstream 2825 true Chr06: 12767922-12770746 Phaseolus vulgaris
Phvul.006G033900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 12769747-12770746 Phaseolus vulgaris
Phvul.006G033900 2.0kb upstream 2.0kb upstream 3825 true Chr06: 12765922-12769746 Phaseolus vulgaris
Phvul.006G033900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 12765922-12767921 Phaseolus vulgaris
Phvul.006G033900 2.0kb downstream 2.0kb downstream 3825 true Chr06: 12767922-12771746 Phaseolus vulgaris
Phvul.006G033900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 12769747-12771746 Phaseolus vulgaris
Phvul.006G033900 5.0kb upstream 5.0kb upstream 6825 true Chr06: 12762922-12769746 Phaseolus vulgaris
Phvul.006G033900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 12762922-12767921 Phaseolus vulgaris
Phvul.006G033900 5.0kb downstream 5.0kb downstream 6825 true Chr06: 12767922-12774746 Phaseolus vulgaris
Phvul.006G033900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 12769747-12774746 Phaseolus vulgaris
Phvul.006G033900 10.0kb upstream 10.0kb upstream 11825 true Chr06: 12757922-12769746 Phaseolus vulgaris
Phvul.006G033900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 12757922-12767921 Phaseolus vulgaris
Phvul.006G033900 10.0kb downstream 10.0kb downstream 11825 true Chr06: 12767922-12779746 Phaseolus vulgaris
Phvul.006G033900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 12769747-12779746 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302047 5265 Fabidae View MSA
124068625 5270 Rosid View MSA
123747098 5271 Pentapetalae View MSA
122793338 5272 Eudicot View MSA
122042133 5273 Angiosperm View MSA
121349082 5274 Embryophyte View MSA
123381156 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.9458 0.0 163.085 High  
cufflinks 22.7732 0.0 60.7409    
cufflinks 247.949 0.0 719.024 High  
cufflinks 40.6151 0.0 105.115 High  
cufflinks 78.3493 0.0 205.108 High  
cufflinks 431.41 0.0 1353.71 High  
cufflinks 0.0782039 0.0 0.356061 Low Low
cufflinks 0.0300832 0.0 0.152318 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0201855 0.0 0.10797 Low Low
cufflinks 143.183 0.0 388.86 High  

0 Strain