Gene : Phvul.006G035500 P. vulgaris v2.1
Defline:  (1 of 2) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  309
Name:  ? Phvul.006G035500 Secondary Identifier:  ? PAC:37173475
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYOXYLATE-BYPASS Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G035500 0.5kb upstream 0.5kb upstream 9591 true Chr06: 13201211-13210801 Phaseolus vulgaris
Phvul.006G035500 0.5kb upstream 0.5kb upstream 500 false Chr06: 13201211-13201710 Phaseolus vulgaris
Phvul.006G035500 0.5kb downstream 0.5kb downstream 9591 true Chr06: 13201711-13211301 Phaseolus vulgaris
Phvul.006G035500 0.5kb downstream 0.5kb downstream 500 false Chr06: 13210802-13211301 Phaseolus vulgaris
Phvul.006G035500 1.0kb upstream 1.0kb upstream 10091 true Chr06: 13200711-13210801 Phaseolus vulgaris
Phvul.006G035500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 13200711-13201710 Phaseolus vulgaris
Phvul.006G035500 1.0kb downstream 1.0kb downstream 10091 true Chr06: 13201711-13211801 Phaseolus vulgaris
Phvul.006G035500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 13210802-13211801 Phaseolus vulgaris
Phvul.006G035500 2.0kb upstream 2.0kb upstream 11091 true Chr06: 13199711-13210801 Phaseolus vulgaris
Phvul.006G035500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 13199711-13201710 Phaseolus vulgaris
Phvul.006G035500 2.0kb downstream 2.0kb downstream 11091 true Chr06: 13201711-13212801 Phaseolus vulgaris
Phvul.006G035500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 13210802-13212801 Phaseolus vulgaris
Phvul.006G035500 5.0kb upstream 5.0kb upstream 14091 true Chr06: 13196711-13210801 Phaseolus vulgaris
Phvul.006G035500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 13196711-13201710 Phaseolus vulgaris
Phvul.006G035500 5.0kb downstream 5.0kb downstream 14091 true Chr06: 13201711-13215801 Phaseolus vulgaris
Phvul.006G035500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 13210802-13215801 Phaseolus vulgaris
Phvul.006G035500 10.0kb upstream 10.0kb upstream 19091 true Chr06: 13191711-13210801 Phaseolus vulgaris
Phvul.006G035500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 13191711-13201710 Phaseolus vulgaris
Phvul.006G035500 10.0kb downstream 10.0kb downstream 19091 true Chr06: 13201711-13220801 Phaseolus vulgaris
Phvul.006G035500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 13210802-13220801 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309645 5265 Fabidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 64.391 0.0 174.585 High High
cufflinks 26.3711 0.0 68.1968    
cufflinks 15.0969 0.0 39.3933   Low
cufflinks 34.3012 0.0 89.1527    
cufflinks 26.4288 0.0 68.3246    
cufflinks 18.6215 0.0 48.2683   Low
cufflinks 30.143 0.0 78.122 High  
cufflinks 25.984 0.0 67.2063    
cufflinks 34.7263 0.0 90.3077 High  
cufflinks 55.7222 0.0 149.063 High High
cufflinks 28.7408 0.0 74.3615    

0 Strain