Gene : Phvul.010G074960 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  676
Name:  ? Phvul.010G074960 Secondary Identifier:  ? PAC:37142905
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G074960 0.5kb upstream 0.5kb upstream 1928 true Chr10: 16977900-16979827 Phaseolus vulgaris
Phvul.010G074960 0.5kb upstream 0.5kb upstream 500 false Chr10: 16977900-16978399 Phaseolus vulgaris
Phvul.010G074960 0.5kb downstream 0.5kb downstream 1928 true Chr10: 16978400-16980327 Phaseolus vulgaris
Phvul.010G074960 0.5kb downstream 0.5kb downstream 500 false Chr10: 16979828-16980327 Phaseolus vulgaris
Phvul.010G074960 1.0kb upstream 1.0kb upstream 2428 true Chr10: 16977400-16979827 Phaseolus vulgaris
Phvul.010G074960 1.0kb upstream 1.0kb upstream 1000 false Chr10: 16977400-16978399 Phaseolus vulgaris
Phvul.010G074960 1.0kb downstream 1.0kb downstream 2428 true Chr10: 16978400-16980827 Phaseolus vulgaris
Phvul.010G074960 1.0kb downstream 1.0kb downstream 1000 false Chr10: 16979828-16980827 Phaseolus vulgaris
Phvul.010G074960 2.0kb upstream 2.0kb upstream 3428 true Chr10: 16976400-16979827 Phaseolus vulgaris
Phvul.010G074960 2.0kb upstream 2.0kb upstream 2000 false Chr10: 16976400-16978399 Phaseolus vulgaris
Phvul.010G074960 2.0kb downstream 2.0kb downstream 3428 true Chr10: 16978400-16981827 Phaseolus vulgaris
Phvul.010G074960 2.0kb downstream 2.0kb downstream 2000 false Chr10: 16979828-16981827 Phaseolus vulgaris
Phvul.010G074960 5.0kb upstream 5.0kb upstream 6428 true Chr10: 16973400-16979827 Phaseolus vulgaris
Phvul.010G074960 5.0kb upstream 5.0kb upstream 5000 false Chr10: 16973400-16978399 Phaseolus vulgaris
Phvul.010G074960 5.0kb downstream 5.0kb downstream 6428 true Chr10: 16978400-16984827 Phaseolus vulgaris
Phvul.010G074960 5.0kb downstream 5.0kb downstream 5000 false Chr10: 16979828-16984827 Phaseolus vulgaris
Phvul.010G074960 10.0kb upstream 10.0kb upstream 11428 true Chr10: 16968400-16979827 Phaseolus vulgaris
Phvul.010G074960 10.0kb upstream 10.0kb upstream 10000 false Chr10: 16968400-16978399 Phaseolus vulgaris
Phvul.010G074960 10.0kb downstream 10.0kb downstream 11428 true Chr10: 16978400-16989827 Phaseolus vulgaris
Phvul.010G074960 10.0kb downstream 10.0kb downstream 10000 false Chr10: 16979828-16989827 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316477 5265 Fabidae View MSA
124065193 5270 Rosid View MSA
123739429 5271 Pentapetalae View MSA
122786943 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.0018 0.0 7.26717    
cufflinks 1.3939 0.0 5.43147    
cufflinks 5.59411 0.0 18.3419   High
cufflinks 1.20946 0.0 5.1984    
cufflinks 1.11618 0.0 4.71967    
cufflinks 3.47835 0.0 12.2817   High
cufflinks 0.720083 0.0 3.22115   Low
cufflinks 1.12073 0.0 4.57639    
cufflinks 1.07803 0.0 4.2126    
cufflinks 2.98711 0.0 10.3474    
cufflinks 0.827461 0.0 3.61728   Low

0 Strain