Gene : Phvul.010G073800 P. vulgaris v2.1
Defline:  (1 of 7) PTHR11709:SF103 - LACCASE-16 Genomic Order:  670
Name:  ? Phvul.010G073800 Secondary Identifier:  ? PAC:37142889
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5466 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6824 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G073800 0.5kb upstream 0.5kb upstream 4641 true Chr10: 15948257-15952897 Phaseolus vulgaris
Phvul.010G073800 0.5kb upstream 0.5kb upstream 500 false Chr10: 15952398-15952897 Phaseolus vulgaris
Phvul.010G073800 0.5kb downstream 0.5kb downstream 4641 true Chr10: 15947757-15952397 Phaseolus vulgaris
Phvul.010G073800 0.5kb downstream 0.5kb downstream 500 false Chr10: 15947757-15948256 Phaseolus vulgaris
Phvul.010G073800 1.0kb upstream 1.0kb upstream 5141 true Chr10: 15948257-15953397 Phaseolus vulgaris
Phvul.010G073800 1.0kb upstream 1.0kb upstream 1000 false Chr10: 15952398-15953397 Phaseolus vulgaris
Phvul.010G073800 1.0kb downstream 1.0kb downstream 5141 true Chr10: 15947257-15952397 Phaseolus vulgaris
Phvul.010G073800 1.0kb downstream 1.0kb downstream 1000 false Chr10: 15947257-15948256 Phaseolus vulgaris
Phvul.010G073800 2.0kb upstream 2.0kb upstream 6141 true Chr10: 15948257-15954397 Phaseolus vulgaris
Phvul.010G073800 2.0kb upstream 2.0kb upstream 2000 false Chr10: 15952398-15954397 Phaseolus vulgaris
Phvul.010G073800 2.0kb downstream 2.0kb downstream 6141 true Chr10: 15946257-15952397 Phaseolus vulgaris
Phvul.010G073800 2.0kb downstream 2.0kb downstream 2000 false Chr10: 15946257-15948256 Phaseolus vulgaris
Phvul.010G073800 5.0kb upstream 5.0kb upstream 9141 true Chr10: 15948257-15957397 Phaseolus vulgaris
Phvul.010G073800 5.0kb upstream 5.0kb upstream 5000 false Chr10: 15952398-15957397 Phaseolus vulgaris
Phvul.010G073800 5.0kb downstream 5.0kb downstream 9141 true Chr10: 15943257-15952397 Phaseolus vulgaris
Phvul.010G073800 5.0kb downstream 5.0kb downstream 5000 false Chr10: 15943257-15948256 Phaseolus vulgaris
Phvul.010G073800 10.0kb upstream 10.0kb upstream 14141 true Chr10: 15948257-15962397 Phaseolus vulgaris
Phvul.010G073800 10.0kb upstream 10.0kb upstream 10000 false Chr10: 15952398-15962397 Phaseolus vulgaris
Phvul.010G073800 10.0kb downstream 10.0kb downstream 14141 true Chr10: 15938257-15952397 Phaseolus vulgaris
Phvul.010G073800 10.0kb downstream 10.0kb downstream 10000 false Chr10: 15938257-15948256 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309801 5265 Fabidae View MSA
124069794 5270 Rosid View MSA
123752484 5271 Pentapetalae View MSA
122797198 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.26248 0.0 4.14641   Low
cufflinks 1.63989 0.0 5.21021   Low
cufflinks 8.96627 0.0 23.9167    
cufflinks 7.81051 0.0 21.1279    
cufflinks 129.739 0.0 383.68 High High
cufflinks 8.78562 0.0 23.4948    
cufflinks 38.088 0.0 100.166 High  
cufflinks 7.78511 0.0 20.9815    
cufflinks 36.6138 0.0 96.1645 High  
cufflinks 10.2007 0.0 27.0593    
cufflinks 164.588 0.0 504.975 High High

0 Strain