Gene : Phvul.006G016200 P. vulgaris v2.1
Defline:  (1 of 3) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Genomic Order:  141
Name:  ? Phvul.006G016200 Secondary Identifier:  ? PAC:37172821
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LEU-DEG2-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G016200 0.5kb upstream 0.5kb upstream 5397 true Chr06: 7574015-7579411 Phaseolus vulgaris
Phvul.006G016200 0.5kb upstream 0.5kb upstream 500 false Chr06: 7578912-7579411 Phaseolus vulgaris
Phvul.006G016200 0.5kb downstream 0.5kb downstream 5397 true Chr06: 7573515-7578911 Phaseolus vulgaris
Phvul.006G016200 0.5kb downstream 0.5kb downstream 500 false Chr06: 7573515-7574014 Phaseolus vulgaris
Phvul.006G016200 1.0kb upstream 1.0kb upstream 5897 true Chr06: 7574015-7579911 Phaseolus vulgaris
Phvul.006G016200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 7578912-7579911 Phaseolus vulgaris
Phvul.006G016200 1.0kb downstream 1.0kb downstream 5897 true Chr06: 7573015-7578911 Phaseolus vulgaris
Phvul.006G016200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 7573015-7574014 Phaseolus vulgaris
Phvul.006G016200 2.0kb upstream 2.0kb upstream 6897 true Chr06: 7574015-7580911 Phaseolus vulgaris
Phvul.006G016200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 7578912-7580911 Phaseolus vulgaris
Phvul.006G016200 2.0kb downstream 2.0kb downstream 6897 true Chr06: 7572015-7578911 Phaseolus vulgaris
Phvul.006G016200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 7572015-7574014 Phaseolus vulgaris
Phvul.006G016200 5.0kb upstream 5.0kb upstream 9897 true Chr06: 7574015-7583911 Phaseolus vulgaris
Phvul.006G016200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 7578912-7583911 Phaseolus vulgaris
Phvul.006G016200 5.0kb downstream 5.0kb downstream 9897 true Chr06: 7569015-7578911 Phaseolus vulgaris
Phvul.006G016200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 7569015-7574014 Phaseolus vulgaris
Phvul.006G016200 10.0kb upstream 10.0kb upstream 14897 true Chr06: 7574015-7588911 Phaseolus vulgaris
Phvul.006G016200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 7578912-7588911 Phaseolus vulgaris
Phvul.006G016200 10.0kb downstream 10.0kb downstream 14897 true Chr06: 7564015-7578911 Phaseolus vulgaris
Phvul.006G016200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 7564015-7574014 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314208 5265 Fabidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0966 0.0 29.6244    
cufflinks 8.07238 0.0 22.1762   Low
cufflinks 10.6285 0.0 28.4838    
cufflinks 10.6608 0.0 28.7301    
cufflinks 10.9188 0.0 29.3227    
cufflinks 10.6729 0.0 28.646    
cufflinks 10.1208 0.0 27.284    
cufflinks 6.72394 0.0 18.731   Low
cufflinks 9.32407 0.0 25.3769    
cufflinks 10.8 0.0 28.9567    
cufflinks 12.1687 0.0 32.407   High

0 Strain