Gene : Phvul.010G049401 P. vulgaris v2.1
Defline:  (1 of 1) K14164 - glycyl-tRNA synthetase (glyQS) Genomic Order:  477
Name:  ? Phvul.010G049401 Secondary Identifier:  ? PAC:37143119
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G049401 0.5kb upstream 0.5kb upstream 35201 true Chr10: 7603486-7638686 Phaseolus vulgaris
Phvul.010G049401 0.5kb upstream 0.5kb upstream 500 false Chr10: 7638187-7638686 Phaseolus vulgaris
Phvul.010G049401 0.5kb downstream 0.5kb downstream 35201 true Chr10: 7602986-7638186 Phaseolus vulgaris
Phvul.010G049401 0.5kb downstream 0.5kb downstream 500 false Chr10: 7602986-7603485 Phaseolus vulgaris
Phvul.010G049401 1.0kb upstream 1.0kb upstream 35701 true Chr10: 7603486-7639186 Phaseolus vulgaris
Phvul.010G049401 1.0kb upstream 1.0kb upstream 1000 false Chr10: 7638187-7639186 Phaseolus vulgaris
Phvul.010G049401 1.0kb downstream 1.0kb downstream 35701 true Chr10: 7602486-7638186 Phaseolus vulgaris
Phvul.010G049401 1.0kb downstream 1.0kb downstream 1000 false Chr10: 7602486-7603485 Phaseolus vulgaris
Phvul.010G049401 2.0kb upstream 2.0kb upstream 36701 true Chr10: 7603486-7640186 Phaseolus vulgaris
Phvul.010G049401 2.0kb upstream 2.0kb upstream 2000 false Chr10: 7638187-7640186 Phaseolus vulgaris
Phvul.010G049401 2.0kb downstream 2.0kb downstream 36701 true Chr10: 7601486-7638186 Phaseolus vulgaris
Phvul.010G049401 2.0kb downstream 2.0kb downstream 2000 false Chr10: 7601486-7603485 Phaseolus vulgaris
Phvul.010G049401 5.0kb upstream 5.0kb upstream 39701 true Chr10: 7603486-7643186 Phaseolus vulgaris
Phvul.010G049401 5.0kb upstream 5.0kb upstream 5000 false Chr10: 7638187-7643186 Phaseolus vulgaris
Phvul.010G049401 5.0kb downstream 5.0kb downstream 39701 true Chr10: 7598486-7638186 Phaseolus vulgaris
Phvul.010G049401 5.0kb downstream 5.0kb downstream 5000 false Chr10: 7598486-7603485 Phaseolus vulgaris
Phvul.010G049401 10.0kb upstream 10.0kb upstream 44701 true Chr10: 7603486-7648186 Phaseolus vulgaris
Phvul.010G049401 10.0kb upstream 10.0kb upstream 10000 false Chr10: 7638187-7648186 Phaseolus vulgaris
Phvul.010G049401 10.0kb downstream 10.0kb downstream 44701 true Chr10: 7593486-7638186 Phaseolus vulgaris
Phvul.010G049401 10.0kb downstream 10.0kb downstream 10000 false Chr10: 7593486-7603485 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299757 5265 Fabidae View MSA
124065651 5270 Rosid View MSA
123740680 5271 Pentapetalae View MSA
122789566 5272 Eudicot View MSA
122042333 5273 Angiosperm View MSA
121346597 5274 Embryophyte View MSA
123423909 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.64847 0.0 6.23104   Low
cufflinks 6.13411 0.0 20.6631    
cufflinks 14.079 0.0 44.9961   High
cufflinks 2.60713 0.0 8.98635    
cufflinks 4.08242 0.0 15.0304    
cufflinks 13.1482 0.0 42.1829   High
cufflinks 2.92177 0.0 9.92963    
cufflinks 4.87662 0.0 17.0918    
cufflinks 2.32709 0.0 8.39627    
cufflinks 4.21831 0.0 15.3393    
cufflinks 2.57968 0.0 8.83731    

0 Strain