Gene : Phvul.010G056000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31251:SF4 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 Genomic Order:  589
Name:  ? Phvul.010G056000 Secondary Identifier:  ? PAC:37143196
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G056000 0.5kb upstream 0.5kb upstream 3679 true Chr10: 10001940-10005618 Phaseolus vulgaris
Phvul.010G056000 0.5kb upstream 0.5kb upstream 500 false Chr10: 10001940-10002439 Phaseolus vulgaris
Phvul.010G056000 0.5kb downstream 0.5kb downstream 3679 true Chr10: 10002440-10006118 Phaseolus vulgaris
Phvul.010G056000 0.5kb downstream 0.5kb downstream 500 false Chr10: 10005619-10006118 Phaseolus vulgaris
Phvul.010G056000 1.0kb upstream 1.0kb upstream 4179 true Chr10: 10001440-10005618 Phaseolus vulgaris
Phvul.010G056000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 10001440-10002439 Phaseolus vulgaris
Phvul.010G056000 1.0kb downstream 1.0kb downstream 4179 true Chr10: 10002440-10006618 Phaseolus vulgaris
Phvul.010G056000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 10005619-10006618 Phaseolus vulgaris
Phvul.010G056000 2.0kb upstream 2.0kb upstream 5179 true Chr10: 10000440-10005618 Phaseolus vulgaris
Phvul.010G056000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 10000440-10002439 Phaseolus vulgaris
Phvul.010G056000 2.0kb downstream 2.0kb downstream 5179 true Chr10: 10002440-10007618 Phaseolus vulgaris
Phvul.010G056000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 10005619-10007618 Phaseolus vulgaris
Phvul.010G056000 5.0kb upstream 5.0kb upstream 8179 true Chr10: 9997440-10005618 Phaseolus vulgaris
Phvul.010G056000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 9997440-10002439 Phaseolus vulgaris
Phvul.010G056000 5.0kb downstream 5.0kb downstream 8179 true Chr10: 10002440-10010618 Phaseolus vulgaris
Phvul.010G056000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 10005619-10010618 Phaseolus vulgaris
Phvul.010G056000 10.0kb upstream 10.0kb upstream 13179 true Chr10: 9992440-10005618 Phaseolus vulgaris
Phvul.010G056000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 9992440-10002439 Phaseolus vulgaris
Phvul.010G056000 10.0kb downstream 10.0kb downstream 13179 true Chr10: 10002440-10015618 Phaseolus vulgaris
Phvul.010G056000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 10005619-10015618 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300489 5265 Fabidae View MSA
124061003 5270 Rosid View MSA
123751132 5271 Pentapetalae View MSA
122790055 5272 Eudicot View MSA
122042410 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121309962 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.6866 0.0 53.4829    
cufflinks 116.712 0.0 340.323 High High
cufflinks 3.64699 0.0 10.6427   Low
cufflinks 11.6654 0.0 30.5967    
cufflinks 9.2038 0.0 24.5711    
cufflinks 26.5513 0.0 68.7371    
cufflinks 8.88355 0.0 23.6721    
cufflinks 9.21227 0.0 24.5372    
cufflinks 9.87686 0.0 26.151    
cufflinks 7.61113 0.0 20.6814    
cufflinks 20.0884 0.0 51.9298    

0 Strain