Gene : Phvul.010G056500 P. vulgaris v2.1
Defline:  (1 of 466) PF13041 - PPR repeat family (PPR_2) Genomic Order:  537
Name:  ? Phvul.010G056500 Secondary Identifier:  ? PAC:37142864
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G056500 0.5kb upstream 0.5kb upstream 3304 true Chr10: 8824268-8827571 Phaseolus vulgaris
Phvul.010G056500 0.5kb upstream 0.5kb upstream 500 false Chr10: 8824268-8824767 Phaseolus vulgaris
Phvul.010G056500 0.5kb downstream 0.5kb downstream 3304 true Chr10: 8824768-8828071 Phaseolus vulgaris
Phvul.010G056500 0.5kb downstream 0.5kb downstream 500 false Chr10: 8827572-8828071 Phaseolus vulgaris
Phvul.010G056500 1.0kb upstream 1.0kb upstream 3804 true Chr10: 8823768-8827571 Phaseolus vulgaris
Phvul.010G056500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 8823768-8824767 Phaseolus vulgaris
Phvul.010G056500 1.0kb downstream 1.0kb downstream 3804 true Chr10: 8824768-8828571 Phaseolus vulgaris
Phvul.010G056500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 8827572-8828571 Phaseolus vulgaris
Phvul.010G056500 2.0kb upstream 2.0kb upstream 4804 true Chr10: 8822768-8827571 Phaseolus vulgaris
Phvul.010G056500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 8822768-8824767 Phaseolus vulgaris
Phvul.010G056500 2.0kb downstream 2.0kb downstream 4804 true Chr10: 8824768-8829571 Phaseolus vulgaris
Phvul.010G056500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 8827572-8829571 Phaseolus vulgaris
Phvul.010G056500 5.0kb upstream 5.0kb upstream 7804 true Chr10: 8819768-8827571 Phaseolus vulgaris
Phvul.010G056500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 8819768-8824767 Phaseolus vulgaris
Phvul.010G056500 5.0kb downstream 5.0kb downstream 7804 true Chr10: 8824768-8832571 Phaseolus vulgaris
Phvul.010G056500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 8827572-8832571 Phaseolus vulgaris
Phvul.010G056500 10.0kb upstream 10.0kb upstream 12804 true Chr10: 8814768-8827571 Phaseolus vulgaris
Phvul.010G056500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 8814768-8824767 Phaseolus vulgaris
Phvul.010G056500 10.0kb downstream 10.0kb downstream 12804 true Chr10: 8824768-8837571 Phaseolus vulgaris
Phvul.010G056500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 8827572-8837571 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301298 5265 Fabidae View MSA
124050377 5270 Rosid View MSA
123739053 5271 Pentapetalae View MSA
122787192 5272 Eudicot View MSA
122046913 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.31884 0.0 19.7506    
cufflinks 12.398 0.0 32.3258   High
cufflinks 6.39563 0.0 17.4664    
cufflinks 10.4729 0.0 27.6164   High
cufflinks 9.36802 0.0 24.8039    
cufflinks 5.0853 0.0 14.1505   Low
cufflinks 6.06353 0.0 16.5604    
cufflinks 7.23572 0.0 19.5207    
cufflinks 7.61692 0.0 20.4557    
cufflinks 6.56589 0.0 17.8694    
cufflinks 8.10507 0.0 21.6746    

0 Strain