Gene : Phvul.010G055700 P. vulgaris v2.1
Defline:  (1 of 2) K00025 - malate dehydrogenase (MDH1) Genomic Order:  586
Name:  ? Phvul.010G055700 Secondary Identifier:  ? PAC:37143889
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLYOXYLATE-BYPASS Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7115 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G055700 0.5kb upstream 0.5kb upstream 4416 true Chr10: 9918395-9922810 Phaseolus vulgaris
Phvul.010G055700 0.5kb upstream 0.5kb upstream 500 false Chr10: 9922311-9922810 Phaseolus vulgaris
Phvul.010G055700 0.5kb downstream 0.5kb downstream 4416 true Chr10: 9917895-9922310 Phaseolus vulgaris
Phvul.010G055700 0.5kb downstream 0.5kb downstream 500 false Chr10: 9917895-9918394 Phaseolus vulgaris
Phvul.010G055700 1.0kb upstream 1.0kb upstream 4916 true Chr10: 9918395-9923310 Phaseolus vulgaris
Phvul.010G055700 1.0kb upstream 1.0kb upstream 1000 false Chr10: 9922311-9923310 Phaseolus vulgaris
Phvul.010G055700 1.0kb downstream 1.0kb downstream 4916 true Chr10: 9917395-9922310 Phaseolus vulgaris
Phvul.010G055700 1.0kb downstream 1.0kb downstream 1000 false Chr10: 9917395-9918394 Phaseolus vulgaris
Phvul.010G055700 2.0kb upstream 2.0kb upstream 5916 true Chr10: 9918395-9924310 Phaseolus vulgaris
Phvul.010G055700 2.0kb upstream 2.0kb upstream 2000 false Chr10: 9922311-9924310 Phaseolus vulgaris
Phvul.010G055700 2.0kb downstream 2.0kb downstream 5916 true Chr10: 9916395-9922310 Phaseolus vulgaris
Phvul.010G055700 2.0kb downstream 2.0kb downstream 2000 false Chr10: 9916395-9918394 Phaseolus vulgaris
Phvul.010G055700 5.0kb upstream 5.0kb upstream 8916 true Chr10: 9918395-9927310 Phaseolus vulgaris
Phvul.010G055700 5.0kb upstream 5.0kb upstream 5000 false Chr10: 9922311-9927310 Phaseolus vulgaris
Phvul.010G055700 5.0kb downstream 5.0kb downstream 8916 true Chr10: 9913395-9922310 Phaseolus vulgaris
Phvul.010G055700 5.0kb downstream 5.0kb downstream 5000 false Chr10: 9913395-9918394 Phaseolus vulgaris
Phvul.010G055700 10.0kb upstream 10.0kb upstream 13916 true Chr10: 9918395-9932310 Phaseolus vulgaris
Phvul.010G055700 10.0kb upstream 10.0kb upstream 10000 false Chr10: 9922311-9932310 Phaseolus vulgaris
Phvul.010G055700 10.0kb downstream 10.0kb downstream 13916 true Chr10: 9908395-9922310 Phaseolus vulgaris
Phvul.010G055700 10.0kb downstream 10.0kb downstream 10000 false Chr10: 9908395-9918394 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300878 5265 Fabidae View MSA
124071542 5270 Rosid View MSA
123746984 5271 Pentapetalae View MSA
122786587 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.922176 0.0 4.04044    
cufflinks 2.77558 0.0 9.40931    
cufflinks 7.91784 0.0 25.9503    
cufflinks 5.11746 0.0 18.886    
cufflinks 5.23884 0.0 18.9064    
cufflinks 2.55101 0.0 8.82246    
cufflinks 6.79104 0.0 22.92    
cufflinks 2.05027 0.0 11.2519    
cufflinks 9.26591 0.0 44.879    
cufflinks 0.0754655 0.0 0.345584 Low Low
cufflinks 5.2412 0.0 19.0149    

0 Strain