Gene : Phvul.010G040300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10210:SF58 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 5, CHLOROPLASTIC Genomic Order:  396
Name:  ? Phvul.010G040300 Secondary Identifier:  ? PAC:37143471
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-662 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G040300 0.5kb upstream 0.5kb upstream 12966 true Chr10: 5894627-5907592 Phaseolus vulgaris
Phvul.010G040300 0.5kb upstream 0.5kb upstream 500 false Chr10: 5894627-5895126 Phaseolus vulgaris
Phvul.010G040300 0.5kb downstream 0.5kb downstream 12966 true Chr10: 5895127-5908092 Phaseolus vulgaris
Phvul.010G040300 0.5kb downstream 0.5kb downstream 500 false Chr10: 5907593-5908092 Phaseolus vulgaris
Phvul.010G040300 1.0kb upstream 1.0kb upstream 13466 true Chr10: 5894127-5907592 Phaseolus vulgaris
Phvul.010G040300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5894127-5895126 Phaseolus vulgaris
Phvul.010G040300 1.0kb downstream 1.0kb downstream 13466 true Chr10: 5895127-5908592 Phaseolus vulgaris
Phvul.010G040300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5907593-5908592 Phaseolus vulgaris
Phvul.010G040300 2.0kb upstream 2.0kb upstream 14466 true Chr10: 5893127-5907592 Phaseolus vulgaris
Phvul.010G040300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5893127-5895126 Phaseolus vulgaris
Phvul.010G040300 2.0kb downstream 2.0kb downstream 14466 true Chr10: 5895127-5909592 Phaseolus vulgaris
Phvul.010G040300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5907593-5909592 Phaseolus vulgaris
Phvul.010G040300 5.0kb upstream 5.0kb upstream 17466 true Chr10: 5890127-5907592 Phaseolus vulgaris
Phvul.010G040300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5890127-5895126 Phaseolus vulgaris
Phvul.010G040300 5.0kb downstream 5.0kb downstream 17466 true Chr10: 5895127-5912592 Phaseolus vulgaris
Phvul.010G040300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5907593-5912592 Phaseolus vulgaris
Phvul.010G040300 10.0kb upstream 10.0kb upstream 22466 true Chr10: 5885127-5907592 Phaseolus vulgaris
Phvul.010G040300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5885127-5895126 Phaseolus vulgaris
Phvul.010G040300 10.0kb downstream 10.0kb downstream 22466 true Chr10: 5895127-5917592 Phaseolus vulgaris
Phvul.010G040300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5907593-5917592 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304636 5265 Fabidae View MSA
124060795 5270 Rosid View MSA
123749025 5271 Pentapetalae View MSA
122788028 5272 Eudicot View MSA
122042217 5273 Angiosperm View MSA
121347994 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.9356 0.0 87.2529    
cufflinks 17.6323 0.0 69.1209    
cufflinks 53.0638 0.0 194.225 High High
cufflinks 23.2133 0.0 82.3066    
cufflinks 15.5291 0.0 62.0571    
cufflinks 26.7463 0.0 93.4454    
cufflinks 10.2964 0.0 40.5881   Low
cufflinks 9.71343 0.0 39.349   Low
cufflinks 10.1828 0.0 44.0152   Low
cufflinks 19.9879 0.0 77.8866    
cufflinks 14.8782 0.0 55.1331    

0 Strain