Gene : Phvul.010G045500 P. vulgaris v2.1
Defline:  (1 of 425) PF01535 - PPR repeat (PPR) Genomic Order:  447
Name:  ? Phvul.010G045500 Secondary Identifier:  ? PAC:37142664
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G045500 0.5kb upstream 0.5kb upstream 4502 true Chr10: 6955455-6959956 Phaseolus vulgaris
Phvul.010G045500 0.5kb upstream 0.5kb upstream 500 false Chr10: 6959457-6959956 Phaseolus vulgaris
Phvul.010G045500 0.5kb downstream 0.5kb downstream 4502 true Chr10: 6954955-6959456 Phaseolus vulgaris
Phvul.010G045500 0.5kb downstream 0.5kb downstream 500 false Chr10: 6954955-6955454 Phaseolus vulgaris
Phvul.010G045500 1.0kb upstream 1.0kb upstream 5002 true Chr10: 6955455-6960456 Phaseolus vulgaris
Phvul.010G045500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 6959457-6960456 Phaseolus vulgaris
Phvul.010G045500 1.0kb downstream 1.0kb downstream 5002 true Chr10: 6954455-6959456 Phaseolus vulgaris
Phvul.010G045500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 6954455-6955454 Phaseolus vulgaris
Phvul.010G045500 2.0kb upstream 2.0kb upstream 6002 true Chr10: 6955455-6961456 Phaseolus vulgaris
Phvul.010G045500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 6959457-6961456 Phaseolus vulgaris
Phvul.010G045500 2.0kb downstream 2.0kb downstream 6002 true Chr10: 6953455-6959456 Phaseolus vulgaris
Phvul.010G045500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 6953455-6955454 Phaseolus vulgaris
Phvul.010G045500 5.0kb upstream 5.0kb upstream 9002 true Chr10: 6955455-6964456 Phaseolus vulgaris
Phvul.010G045500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 6959457-6964456 Phaseolus vulgaris
Phvul.010G045500 5.0kb downstream 5.0kb downstream 9002 true Chr10: 6950455-6959456 Phaseolus vulgaris
Phvul.010G045500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 6950455-6955454 Phaseolus vulgaris
Phvul.010G045500 10.0kb upstream 10.0kb upstream 14002 true Chr10: 6955455-6969456 Phaseolus vulgaris
Phvul.010G045500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 6959457-6969456 Phaseolus vulgaris
Phvul.010G045500 10.0kb downstream 10.0kb downstream 14002 true Chr10: 6945455-6959456 Phaseolus vulgaris
Phvul.010G045500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 6945455-6955454 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304708 5265 Fabidae View MSA
124062625 5270 Rosid View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.30766 0.0 17.5869    
cufflinks 7.31162 0.0 20.1792    
cufflinks 30.3033 0.0 78.5047   High
cufflinks 5.44569 0.0 15.5428    
cufflinks 6.46265 0.0 18.1226    
cufflinks 33.2859 0.0 86.3625 High High
cufflinks 2.06593 0.0 6.52997   Low
cufflinks 2.50394 0.0 7.70044    
cufflinks 2.49301 0.0 7.73786   Low
cufflinks 5.32425 0.0 15.1312    
cufflinks 4.80004 0.0 13.8367    

0 Strain