Gene : Phvul.005G183800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR16517:SF27 - TUBBY-LIKE PROTEIN 8 Genomic Order:  1737
Name:  ? Phvul.005G183800 Secondary Identifier:  ? PAC:37154406
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G183800 0.5kb upstream 0.5kb upstream 2994 true Chr05: 40763641-40766634 Phaseolus vulgaris
Phvul.005G183800 0.5kb upstream 0.5kb upstream 500 false Chr05: 40766135-40766634 Phaseolus vulgaris
Phvul.005G183800 0.5kb downstream 0.5kb downstream 2994 true Chr05: 40763141-40766134 Phaseolus vulgaris
Phvul.005G183800 0.5kb downstream 0.5kb downstream 500 false Chr05: 40763141-40763640 Phaseolus vulgaris
Phvul.005G183800 1.0kb upstream 1.0kb upstream 3494 true Chr05: 40763641-40767134 Phaseolus vulgaris
Phvul.005G183800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40766135-40767134 Phaseolus vulgaris
Phvul.005G183800 1.0kb downstream 1.0kb downstream 3494 true Chr05: 40762641-40766134 Phaseolus vulgaris
Phvul.005G183800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40762641-40763640 Phaseolus vulgaris
Phvul.005G183800 2.0kb upstream 2.0kb upstream 4494 true Chr05: 40763641-40768134 Phaseolus vulgaris
Phvul.005G183800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40766135-40768134 Phaseolus vulgaris
Phvul.005G183800 2.0kb downstream 2.0kb downstream 4494 true Chr05: 40761641-40766134 Phaseolus vulgaris
Phvul.005G183800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40761641-40763640 Phaseolus vulgaris
Phvul.005G183800 5.0kb upstream 5.0kb upstream 7494 true Chr05: 40763641-40771134 Phaseolus vulgaris
Phvul.005G183800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40766135-40771134 Phaseolus vulgaris
Phvul.005G183800 5.0kb downstream 5.0kb downstream 7494 true Chr05: 40758641-40766134 Phaseolus vulgaris
Phvul.005G183800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40758641-40763640 Phaseolus vulgaris
Phvul.005G183800 10.0kb upstream 10.0kb upstream 12494 true Chr05: 40763641-40776134 Phaseolus vulgaris
Phvul.005G183800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40766135-40776134 Phaseolus vulgaris
Phvul.005G183800 10.0kb downstream 10.0kb downstream 12494 true Chr05: 40753641-40766134 Phaseolus vulgaris
Phvul.005G183800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40753641-40763640 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304088 5265 Fabidae View MSA
124063219 5270 Rosid View MSA
123740290 5271 Pentapetalae View MSA
122793260 5272 Eudicot View MSA
122048608 5273 Angiosperm View MSA
121311037 5274 Embryophyte View MSA
123348391 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.990315 0.0 5.54632    
cufflinks 3.57738 0.0 14.1601    
cufflinks 0.135655 0.0 0.556166 Low Low
cufflinks 0.625077 0.0 2.75645    
cufflinks 2.17601 0.0 9.87971    
cufflinks 2.73052 0.0 11.5675    
cufflinks 2.96122 0.0 12.1689    
cufflinks 3.04377 0.0 12.8843    
cufflinks 2.02038 0.0 8.95465    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.77197 0.0 9.11109    

0 Strain