Gene : Phvul.005G185600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13068:SF3 - MTERF DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL Genomic Order:  1755
Name:  ? Phvul.005G185600 Secondary Identifier:  ? PAC:37154367
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G185600 0.5kb upstream 0.5kb upstream 4446 true Chr05: 40889358-40893803 Phaseolus vulgaris
Phvul.005G185600 0.5kb upstream 0.5kb upstream 500 false Chr05: 40893304-40893803 Phaseolus vulgaris
Phvul.005G185600 0.5kb downstream 0.5kb downstream 4446 true Chr05: 40888858-40893303 Phaseolus vulgaris
Phvul.005G185600 0.5kb downstream 0.5kb downstream 500 false Chr05: 40888858-40889357 Phaseolus vulgaris
Phvul.005G185600 1.0kb upstream 1.0kb upstream 4946 true Chr05: 40889358-40894303 Phaseolus vulgaris
Phvul.005G185600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40893304-40894303 Phaseolus vulgaris
Phvul.005G185600 1.0kb downstream 1.0kb downstream 4946 true Chr05: 40888358-40893303 Phaseolus vulgaris
Phvul.005G185600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40888358-40889357 Phaseolus vulgaris
Phvul.005G185600 2.0kb upstream 2.0kb upstream 5946 true Chr05: 40889358-40895303 Phaseolus vulgaris
Phvul.005G185600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40893304-40895303 Phaseolus vulgaris
Phvul.005G185600 2.0kb downstream 2.0kb downstream 5946 true Chr05: 40887358-40893303 Phaseolus vulgaris
Phvul.005G185600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40887358-40889357 Phaseolus vulgaris
Phvul.005G185600 5.0kb upstream 5.0kb upstream 8946 true Chr05: 40889358-40898303 Phaseolus vulgaris
Phvul.005G185600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40893304-40898303 Phaseolus vulgaris
Phvul.005G185600 5.0kb downstream 5.0kb downstream 8946 true Chr05: 40884358-40893303 Phaseolus vulgaris
Phvul.005G185600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40884358-40889357 Phaseolus vulgaris
Phvul.005G185600 10.0kb upstream 10.0kb upstream 13946 true Chr05: 40889358-40903303 Phaseolus vulgaris
Phvul.005G185600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40893304-40903303 Phaseolus vulgaris
Phvul.005G185600 10.0kb downstream 10.0kb downstream 13946 true Chr05: 40879358-40893303 Phaseolus vulgaris
Phvul.005G185600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40879358-40889357 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041220 5273 Angiosperm View MSA
122300080 5265 Fabidae View MSA
124065704 5270 Rosid View MSA
123736399 5271 Pentapetalae View MSA
122793347 5272 Eudicot View MSA
121345180 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.38445 0.0 22.0993    
cufflinks 5.41712 0.0 17.8007    
cufflinks 7.1859 0.0 26.9651   High
cufflinks 6.20286 0.0 21.5657    
cufflinks 4.22811 0.0 18.9541    
cufflinks 6.57945 0.0 26.0752    
cufflinks 3.47142 0.0 14.0506    
cufflinks 2.14882 0.0 12.4546   Low
cufflinks 3.39272 0.0 13.1725    
cufflinks 7.41868 0.0 24.8514   High
cufflinks 4.6282 0.0 16.8729    

0 Strain