Gene : Phvul.006G125800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR32448:SF11 - BERBERINE BRIDGE ENZYME-RELATED Genomic Order:  1252
Name:  ? Phvul.006G125800 Secondary Identifier:  ? PAC:37174085
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G125800 0.5kb upstream 0.5kb upstream 2419 true Chr06: 23360989-23363407 Phaseolus vulgaris
Phvul.006G125800 0.5kb upstream 0.5kb upstream 500 false Chr06: 23360989-23361488 Phaseolus vulgaris
Phvul.006G125800 0.5kb downstream 0.5kb downstream 2419 true Chr06: 23361489-23363907 Phaseolus vulgaris
Phvul.006G125800 0.5kb downstream 0.5kb downstream 500 false Chr06: 23363408-23363907 Phaseolus vulgaris
Phvul.006G125800 1.0kb upstream 1.0kb upstream 2919 true Chr06: 23360489-23363407 Phaseolus vulgaris
Phvul.006G125800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23360489-23361488 Phaseolus vulgaris
Phvul.006G125800 1.0kb downstream 1.0kb downstream 2919 true Chr06: 23361489-23364407 Phaseolus vulgaris
Phvul.006G125800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23363408-23364407 Phaseolus vulgaris
Phvul.006G125800 2.0kb upstream 2.0kb upstream 3919 true Chr06: 23359489-23363407 Phaseolus vulgaris
Phvul.006G125800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23359489-23361488 Phaseolus vulgaris
Phvul.006G125800 2.0kb downstream 2.0kb downstream 3919 true Chr06: 23361489-23365407 Phaseolus vulgaris
Phvul.006G125800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23363408-23365407 Phaseolus vulgaris
Phvul.006G125800 5.0kb upstream 5.0kb upstream 6919 true Chr06: 23356489-23363407 Phaseolus vulgaris
Phvul.006G125800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23356489-23361488 Phaseolus vulgaris
Phvul.006G125800 5.0kb downstream 5.0kb downstream 6919 true Chr06: 23361489-23368407 Phaseolus vulgaris
Phvul.006G125800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23363408-23368407 Phaseolus vulgaris
Phvul.006G125800 10.0kb upstream 10.0kb upstream 11919 true Chr06: 23351489-23363407 Phaseolus vulgaris
Phvul.006G125800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23351489-23361488 Phaseolus vulgaris
Phvul.006G125800 10.0kb downstream 10.0kb downstream 11919 true Chr06: 23361489-23373407 Phaseolus vulgaris
Phvul.006G125800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23363408-23373407 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302697 5265 Fabidae View MSA
124070066 5270 Rosid View MSA
123750008 5271 Pentapetalae View MSA
122797707 5272 Eudicot View MSA
122049918 5273 Angiosperm View MSA
121351151 5274 Embryophyte View MSA
123426970 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.57958 0.0 5.09946   Low
cufflinks 1.05671 0.0 3.57011   Low
cufflinks 3.7798 0.0 10.9936    
cufflinks 4.39732 0.0 12.737    
cufflinks 9.29341 0.0 25.1205    
cufflinks 2.95969 0.0 8.87661    
cufflinks 14.6088 0.0 38.1012    
cufflinks 6.10714 0.0 16.9314    
cufflinks 29.3468 0.0 76.0428   High
cufflinks 17.0028 0.0 44.1868   High
cufflinks 7.84823 0.0 21.472    

0 Strain