Gene : Phvul.006G126900 P. vulgaris v2.1
Defline:  (1 of 2) K00013 - histidinol dehydrogenase (hisD) Genomic Order:  1263
Name:  ? Phvul.006G126900 Secondary Identifier:  ? PAC:37172879
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris HISTSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G126900 0.5kb upstream 0.5kb upstream 5492 true Chr06: 23467023-23472514 Phaseolus vulgaris
Phvul.006G126900 0.5kb upstream 0.5kb upstream 500 false Chr06: 23472015-23472514 Phaseolus vulgaris
Phvul.006G126900 0.5kb downstream 0.5kb downstream 5492 true Chr06: 23466523-23472014 Phaseolus vulgaris
Phvul.006G126900 0.5kb downstream 0.5kb downstream 500 false Chr06: 23466523-23467022 Phaseolus vulgaris
Phvul.006G126900 1.0kb upstream 1.0kb upstream 5992 true Chr06: 23467023-23473014 Phaseolus vulgaris
Phvul.006G126900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23472015-23473014 Phaseolus vulgaris
Phvul.006G126900 1.0kb downstream 1.0kb downstream 5992 true Chr06: 23466023-23472014 Phaseolus vulgaris
Phvul.006G126900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23466023-23467022 Phaseolus vulgaris
Phvul.006G126900 2.0kb upstream 2.0kb upstream 6992 true Chr06: 23467023-23474014 Phaseolus vulgaris
Phvul.006G126900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23472015-23474014 Phaseolus vulgaris
Phvul.006G126900 2.0kb downstream 2.0kb downstream 6992 true Chr06: 23465023-23472014 Phaseolus vulgaris
Phvul.006G126900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23465023-23467022 Phaseolus vulgaris
Phvul.006G126900 5.0kb upstream 5.0kb upstream 9992 true Chr06: 23467023-23477014 Phaseolus vulgaris
Phvul.006G126900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23472015-23477014 Phaseolus vulgaris
Phvul.006G126900 5.0kb downstream 5.0kb downstream 9992 true Chr06: 23462023-23472014 Phaseolus vulgaris
Phvul.006G126900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23462023-23467022 Phaseolus vulgaris
Phvul.006G126900 10.0kb upstream 10.0kb upstream 14992 true Chr06: 23467023-23482014 Phaseolus vulgaris
Phvul.006G126900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23472015-23482014 Phaseolus vulgaris
Phvul.006G126900 10.0kb downstream 10.0kb downstream 14992 true Chr06: 23457023-23472014 Phaseolus vulgaris
Phvul.006G126900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23457023-23467022 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312335 5265 Fabidae View MSA
124061664 5270 Rosid View MSA
123738837 5271 Pentapetalae View MSA
122785994 5272 Eudicot View MSA
122046994 5273 Angiosperm View MSA
121351553 5274 Embryophyte View MSA
123424167 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.87823 0.0 26.45    
cufflinks 11.9576 0.0 31.5861    
cufflinks 21.2259 0.0 54.8811   High
cufflinks 11.3868 0.0 30.2518    
cufflinks 8.8356 0.0 23.9416   Low
cufflinks 13.0367 0.0 34.2423    
cufflinks 9.81323 0.0 26.2626    
cufflinks 11.3193 0.0 29.9673    
cufflinks 10.017 0.0 26.7959    
cufflinks 12.691 0.0 33.4516    
cufflinks 9.31252 0.0 25.1104    

0 Strain