Gene : Phvul.009G020500 P. vulgaris v2.1
Defline:  (1 of 2) 4.1.1.17 - Ornithine decarboxylase / L-ornithine carboxy-lyase Genomic Order:  203
Name:  ? Phvul.009G020500 Secondary Identifier:  ? PAC:37149470
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris POLYAMINSYN3-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-46 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G020500 0.5kb upstream 0.5kb upstream 2391 true Chr09: 4209168-4211558 Phaseolus vulgaris
Phvul.009G020500 0.5kb upstream 0.5kb upstream 500 false Chr09: 4211059-4211558 Phaseolus vulgaris
Phvul.009G020500 0.5kb downstream 0.5kb downstream 2391 true Chr09: 4208668-4211058 Phaseolus vulgaris
Phvul.009G020500 0.5kb downstream 0.5kb downstream 500 false Chr09: 4208668-4209167 Phaseolus vulgaris
Phvul.009G020500 1.0kb upstream 1.0kb upstream 2891 true Chr09: 4209168-4212058 Phaseolus vulgaris
Phvul.009G020500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 4211059-4212058 Phaseolus vulgaris
Phvul.009G020500 1.0kb downstream 1.0kb downstream 2891 true Chr09: 4208168-4211058 Phaseolus vulgaris
Phvul.009G020500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 4208168-4209167 Phaseolus vulgaris
Phvul.009G020500 2.0kb upstream 2.0kb upstream 3891 true Chr09: 4209168-4213058 Phaseolus vulgaris
Phvul.009G020500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 4211059-4213058 Phaseolus vulgaris
Phvul.009G020500 2.0kb downstream 2.0kb downstream 3891 true Chr09: 4207168-4211058 Phaseolus vulgaris
Phvul.009G020500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 4207168-4209167 Phaseolus vulgaris
Phvul.009G020500 5.0kb upstream 5.0kb upstream 6891 true Chr09: 4209168-4216058 Phaseolus vulgaris
Phvul.009G020500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 4211059-4216058 Phaseolus vulgaris
Phvul.009G020500 5.0kb downstream 5.0kb downstream 6891 true Chr09: 4204168-4211058 Phaseolus vulgaris
Phvul.009G020500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 4204168-4209167 Phaseolus vulgaris
Phvul.009G020500 10.0kb upstream 10.0kb upstream 11891 true Chr09: 4209168-4221058 Phaseolus vulgaris
Phvul.009G020500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 4211059-4221058 Phaseolus vulgaris
Phvul.009G020500 10.0kb downstream 10.0kb downstream 11891 true Chr09: 4199168-4211058 Phaseolus vulgaris
Phvul.009G020500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 4199168-4209167 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301318 5265 Fabidae View MSA
124070276 5270 Rosid View MSA
123742733 5271 Pentapetalae View MSA
122796086 5272 Eudicot View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0514114 0.0 0.226528 Low  
cufflinks 0.0329879 0.0 0.152181 Low  
cufflinks 0.0989456 0.0 0.412369 Low  
cufflinks 0.184416 0.0 0.72337 Low  
cufflinks 0.0877222 0.0 0.367053 Low  
cufflinks 4.05071 0.0 11.7363    
cufflinks 25.1616 0.0 65.1017   High
cufflinks 244.288 0.0 796.189 High High
cufflinks 0.115047 0.0 0.470086 Low  
cufflinks 0.00859775 0.0 0.0459884 Low Low
cufflinks 4.04027 0.0 11.646    

0 Strain