Gene : Phvul.009G019500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11079:SF73 - RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  193
Name:  ? Phvul.009G019500 Secondary Identifier:  ? PAC:37152054
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G019500 0.5kb upstream 0.5kb upstream 5815 true Chr09: 3907135-3912949 Phaseolus vulgaris
Phvul.009G019500 0.5kb upstream 0.5kb upstream 500 false Chr09: 3907135-3907634 Phaseolus vulgaris
Phvul.009G019500 0.5kb downstream 0.5kb downstream 5815 true Chr09: 3907635-3913449 Phaseolus vulgaris
Phvul.009G019500 0.5kb downstream 0.5kb downstream 500 false Chr09: 3912950-3913449 Phaseolus vulgaris
Phvul.009G019500 1.0kb upstream 1.0kb upstream 6315 true Chr09: 3906635-3912949 Phaseolus vulgaris
Phvul.009G019500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 3906635-3907634 Phaseolus vulgaris
Phvul.009G019500 1.0kb downstream 1.0kb downstream 6315 true Chr09: 3907635-3913949 Phaseolus vulgaris
Phvul.009G019500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 3912950-3913949 Phaseolus vulgaris
Phvul.009G019500 2.0kb upstream 2.0kb upstream 7315 true Chr09: 3905635-3912949 Phaseolus vulgaris
Phvul.009G019500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 3905635-3907634 Phaseolus vulgaris
Phvul.009G019500 2.0kb downstream 2.0kb downstream 7315 true Chr09: 3907635-3914949 Phaseolus vulgaris
Phvul.009G019500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 3912950-3914949 Phaseolus vulgaris
Phvul.009G019500 5.0kb upstream 5.0kb upstream 10315 true Chr09: 3902635-3912949 Phaseolus vulgaris
Phvul.009G019500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 3902635-3907634 Phaseolus vulgaris
Phvul.009G019500 5.0kb downstream 5.0kb downstream 10315 true Chr09: 3907635-3917949 Phaseolus vulgaris
Phvul.009G019500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 3912950-3917949 Phaseolus vulgaris
Phvul.009G019500 10.0kb upstream 10.0kb upstream 15315 true Chr09: 3897635-3912949 Phaseolus vulgaris
Phvul.009G019500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 3897635-3907634 Phaseolus vulgaris
Phvul.009G019500 10.0kb downstream 10.0kb downstream 15315 true Chr09: 3907635-3922949 Phaseolus vulgaris
Phvul.009G019500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 3912950-3922949 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297491 5265 Fabidae View MSA
124067698 5270 Rosid View MSA
123740494 5271 Pentapetalae View MSA
122788913 5272 Eudicot View MSA
122047561 5273 Angiosperm View MSA
121344474 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.82775 0.0 14.4826    
cufflinks 5.56233 0.0 22.2273    
cufflinks 10.066 0.0 30.7346   High
cufflinks 5.77507 0.0 23.4139    
cufflinks 3.38905 0.0 13.3446    
cufflinks 9.49878 0.0 33.8626   High
cufflinks 1.67391 0.0 7.93769   Low
cufflinks 1.95345 0.0 8.90678   Low
cufflinks 1.60795 0.0 7.86124   Low
cufflinks 3.74541 0.0 14.6447    
cufflinks 2.95824 0.0 9.51734    

0 Strain