Gene : Phvul.009G021400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23076:SF33 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED Genomic Order:  212
Name:  ? Phvul.009G021400 Secondary Identifier:  ? PAC:37149903
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G021400 0.5kb upstream 0.5kb upstream 4604 true Chr09: 4653007-4657610 Phaseolus vulgaris
Phvul.009G021400 0.5kb upstream 0.5kb upstream 500 false Chr09: 4653007-4653506 Phaseolus vulgaris
Phvul.009G021400 0.5kb downstream 0.5kb downstream 4604 true Chr09: 4653507-4658110 Phaseolus vulgaris
Phvul.009G021400 0.5kb downstream 0.5kb downstream 500 false Chr09: 4657611-4658110 Phaseolus vulgaris
Phvul.009G021400 1.0kb upstream 1.0kb upstream 5104 true Chr09: 4652507-4657610 Phaseolus vulgaris
Phvul.009G021400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 4652507-4653506 Phaseolus vulgaris
Phvul.009G021400 1.0kb downstream 1.0kb downstream 5104 true Chr09: 4653507-4658610 Phaseolus vulgaris
Phvul.009G021400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 4657611-4658610 Phaseolus vulgaris
Phvul.009G021400 2.0kb upstream 2.0kb upstream 6104 true Chr09: 4651507-4657610 Phaseolus vulgaris
Phvul.009G021400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 4651507-4653506 Phaseolus vulgaris
Phvul.009G021400 2.0kb downstream 2.0kb downstream 6104 true Chr09: 4653507-4659610 Phaseolus vulgaris
Phvul.009G021400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 4657611-4659610 Phaseolus vulgaris
Phvul.009G021400 5.0kb upstream 5.0kb upstream 9104 true Chr09: 4648507-4657610 Phaseolus vulgaris
Phvul.009G021400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 4648507-4653506 Phaseolus vulgaris
Phvul.009G021400 5.0kb downstream 5.0kb downstream 9104 true Chr09: 4653507-4662610 Phaseolus vulgaris
Phvul.009G021400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 4657611-4662610 Phaseolus vulgaris
Phvul.009G021400 10.0kb upstream 10.0kb upstream 14104 true Chr09: 4643507-4657610 Phaseolus vulgaris
Phvul.009G021400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 4643507-4653506 Phaseolus vulgaris
Phvul.009G021400 10.0kb downstream 10.0kb downstream 14104 true Chr09: 4653507-4667610 Phaseolus vulgaris
Phvul.009G021400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 4657611-4667610 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310077 5265 Fabidae View MSA
124060614 5270 Rosid View MSA
123737451 5271 Pentapetalae View MSA
122792150 5272 Eudicot View MSA
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 230.761 0.0 841.757 High  
cufflinks 67.3574 0.0 194.475 High  
cufflinks 486.246 0.0 2127.31 High High
cufflinks 87.8851 0.0 262.992 High  
cufflinks 70.9227 0.0 206.939 High  
cufflinks 217.016 0.0 771.718 High  
cufflinks 14.4024 0.0 37.2484   Low
cufflinks 17.4511 0.0 45.2664   Low
cufflinks 18.5078 0.0 48.0801   Low
cufflinks 111.308 0.0 347.688 High  
cufflinks 84.5461 0.0 252.913 High  

0 Strain