Gene : Phvul.006G113400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10666//PTHR10666:SF138 - UBIQUITIN // SUBFAMILY NOT NAMED Genomic Order:  1124
Name:  ? Phvul.006G113400 Secondary Identifier:  ? PAC:37172611
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6351 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6352 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G113400 0.5kb upstream 0.5kb upstream 3163 true Chr06: 22195257-22198419 Phaseolus vulgaris
Phvul.006G113400 0.5kb upstream 0.5kb upstream 500 false Chr06: 22195257-22195756 Phaseolus vulgaris
Phvul.006G113400 0.5kb downstream 0.5kb downstream 3163 true Chr06: 22195757-22198919 Phaseolus vulgaris
Phvul.006G113400 0.5kb downstream 0.5kb downstream 500 false Chr06: 22198420-22198919 Phaseolus vulgaris
Phvul.006G113400 1.0kb upstream 1.0kb upstream 3663 true Chr06: 22194757-22198419 Phaseolus vulgaris
Phvul.006G113400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22194757-22195756 Phaseolus vulgaris
Phvul.006G113400 1.0kb downstream 1.0kb downstream 3663 true Chr06: 22195757-22199419 Phaseolus vulgaris
Phvul.006G113400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22198420-22199419 Phaseolus vulgaris
Phvul.006G113400 2.0kb upstream 2.0kb upstream 4663 true Chr06: 22193757-22198419 Phaseolus vulgaris
Phvul.006G113400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22193757-22195756 Phaseolus vulgaris
Phvul.006G113400 2.0kb downstream 2.0kb downstream 4663 true Chr06: 22195757-22200419 Phaseolus vulgaris
Phvul.006G113400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22198420-22200419 Phaseolus vulgaris
Phvul.006G113400 5.0kb upstream 5.0kb upstream 7663 true Chr06: 22190757-22198419 Phaseolus vulgaris
Phvul.006G113400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22190757-22195756 Phaseolus vulgaris
Phvul.006G113400 5.0kb downstream 5.0kb downstream 7663 true Chr06: 22195757-22203419 Phaseolus vulgaris
Phvul.006G113400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22198420-22203419 Phaseolus vulgaris
Phvul.006G113400 10.0kb upstream 10.0kb upstream 12663 true Chr06: 22185757-22198419 Phaseolus vulgaris
Phvul.006G113400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22185757-22195756 Phaseolus vulgaris
Phvul.006G113400 10.0kb downstream 10.0kb downstream 12663 true Chr06: 22195757-22208419 Phaseolus vulgaris
Phvul.006G113400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22198420-22208419 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313355 5265 Fabidae View MSA
124070925 5270 Rosid View MSA
123742266 5271 Pentapetalae View MSA
122789753 5272 Eudicot View MSA
122042633 5273 Angiosperm View MSA
121350148 5274 Embryophyte View MSA
123381595 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6354 0.0 32.8308    
cufflinks 11.7175 0.0 30.5834    
cufflinks 9.67661 0.0 25.4456    
cufflinks 5.82311 0.0 16.0759   Low
cufflinks 10.3567 0.0 27.2604    
cufflinks 12.5837 0.0 32.7337    
cufflinks 14.8996 0.0 38.5875   High
cufflinks 10.6803 0.0 27.9198    
cufflinks 13.5608 0.0 35.2426    
cufflinks 10.0882 0.0 26.5417    
cufflinks 11.9927 0.0 31.3202    

0 Strain